On Jun 7, 2005, at 12:36 PM, Rainer Hurling wrote:
One first reaction to your suggestions.
[EMAIL PROTECTED] wrote:
On Mon, 23 May 2005 [EMAIL PROTECTED] wrote:
R-2.1.0 fails to compile on the newest release of FreeBSD,
complaining about
undefined references to __builtin_alloca. On FreeBS
On Jun 2, 2005, at 5:52 PM, Tib wrote:
Now I use this to compile my program
g++ engine.cpp -o engine -lm -lRmath -I/Users/tib/R/lib/R/include/
-L/Users/tib/R/bin/
it did not report any error, however as I executed the program
./engine
it reported:
./engine: error while loading shared libraries:
On Jun 1, 2005, at 5:50 AM, (Ted Harding) wrote:
However, a query: Clearly from the above (ahich I can reproduce
too), tan() can distinguish between -0 and +0, and return different
results (otherwise 1/tan() would not return different results).
But how can the user tell the difference betwe
On May 27, 2005, at 3:25 PM, [EMAIL PROTECTED] wrote:
When I type an open paren the (otherwise absolutely wonderful) help
dialog at the bottom crashes R.
Are you talking about the console or the editor?
For example
polygon(c(
[all is well
polygon(c((
2005-05-27 14:13:14.843 R[478] **
On May 24, 2005, at 9:11 AM, Volker Runkel wrote:
with newest R.app (1.11) / R2.1.0a
if a package is installed for the current user, it is not installed
properly (does not get an installed version entry and is not
loadable). If installed system wide it works.
As Rob mentioned, you likely
Please check the list before submitting redundant reports, empty your
cache and download the file from a different mirror. The file must be
over 20MB bytes big if the download is complete.
Thanks,
Simon
On May 22, 2005, at 3:59 AM, [EMAIL PROTECTED] wrote:
Full_Name: Tim Cole
Version: 2.1.
On May 19, 2005, at 5:24 PM, [EMAIL PROTECTED] wrote:
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library
'/Library/Frameworks/R.framework/Resources/library/grDevices/libs/
grDevices.so':
dlcompat: dyld: /Library/Frameworks/R.framework/Resources/bin/
exe
Vadim,
On May 8, 2005, at 2:09 PM, Vadim Ogranovich wrote:
# the naive "[.lwdf" = function (x, i, j) lapply(x[j], function
(col) col[i])
Umm... what about his:
"[.lwdf" = function(x, i, j) { r<-lapply(lapply(j,function(a) x
[[a]]),function(x) x[i]); names(r)<-names(x)[j]; r }
The subsetting oper
On May 7, 2005, at 2:59 PM, Vadim Ogranovich wrote:
But then mylist is not a list:
x <- new("mylist", x = list(x = 1, y = 2))
x[[1]]
Error in x[[1]] : subscript out of bounds
This is probably solvable by a sprinkle of setIs or setAs spells, but
each time I get into the S4 area I feel walking a m
On May 4, 2005, at 2:30 AM, [EMAIL PROTECTED] wrote:
but the sanguine(*) R in MacOS X refuses to start in GUI mode today
with uninformative error message ("The application R has
unexpectedly quit.").
It's an OS X message, nothing R.app can do about it. See the Console
for details - those woul
Bill,
On May 2, 2005, at 8:12 AM, Bill Northcott wrote:
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library '/Users/billn/Public/R/
R-2.1.0/build/library/grDevices/libs/grDevices.so':
dlopen(/Users/billn/Public/R/R-2.1.0/build/library/grDevices/libs/
On May 2, 2005, at 2:55 AM, D0c wrote:
Hey guys thanks for the help. I found Rserve to be a solution i can
work with. i'll just use the JRClient to connect to Rserve. However
i have another problem. How can i get a nice graph from Rserve
using JRCLient using the plot() function?
There are sev
On 26.04.2005, at 12:52, [EMAIL PROTECTED] wrote:
Program received signal SIGINT, Interrupt.
0x006547a2 in _dl_sysinfo_int80 () from /lib/ld-linux.so.2
Thanks you, however Marc omitted to mention that you need to type
signal SIGINT
before running the backtrace (bt), because gdb will catch the INT
On Apr 14, 2005, at 6:01 PM, Tib wrote:
from the examples of Writing R Extensions, I see one still has to
declare the size of arrays by NEW_NUMERIC(n) or
allocVector(REALSXP,n), how can I extend arrays?
AFAIR you cannot extend vectors - it's like in C, you cannot extend
allocated memory without
On Mar 24, 2005, at 6:59 AM, Bill Northcott wrote:
PS This discussion has given me another thought. On MacOS X, it
would be much faster to use floats instead of doubles because they
can be directly processed by the Altivec section of the CPU. I can
see no way to have R use floats. Would t
On Mar 22, 2005, at 6:19 PM, Bill Northcott wrote:
On 23/03/2005, at 12:55 AM, Simon Urbanek wrote:
You may prefer the error, but it is not in the sprit of robust
arithmetic. ie
> d<-matrix(NaN,3,3)
> f<-solve(d)
Error in solve.default(d) : Lapack routine dgesv: system is exactly
Bill,
On Mar 21, 2005, at 10:31 PM, Bill Northcott wrote:
As I see it, the MacOS X behaviour is not IEEE-754 compliant.
I had a quick look at the IEEE web site and it seems quite clear
that NaNs should not cause errors, but propagate through
calculations to be tested at some appropriate (not to
Oleg,
On Mar 16, 2005, at 8:34 PM, Oleg Sklyar wrote:
Sorry, it is always a tradeoff - either to explain or put a
relatively large code,
Just posting all R related commands is sufficient ;) - in your case
that would be the single imgSize alloc and the assignments- but the
full code is fine, too.
On Mar 16, 2005, at 1:34 PM, Vadim Ogranovich wrote:
* suppose that inside a C function I have a SEXP vector x of integers
and I want to increment each element by one. I understand that
Please correct me if I'm wrong, but I thought that the write barrier
applies to assignments of SEXP values only
Oleg,
you gave us only a fragment of your code, so I can only guess what the
problem is:
On Mar 16, 2005, at 12:40 PM, Oleg Sklyar wrote:
// converting element into a matrix
setAttrib(element, R_DimSymbol, imgSize);
What is imgSize? The behavior you describe seems as if you re-using the
imgSize
Currently there is no way to specify R_HOME at build time - it is
hard-coded to ${prefix}/lib/R. This is slightly inconvenient for
special setups (e.g. installing different versions of R in parallel). I
was thinking of something like:
./configure --prefix=/usr --enable-custom-R-home=/usr/share/
On Feb 25, 2005, at 10:05 AM, Oleg Sklyar wrote:
here is the problem, Linux problem (reported to work on Windows). I
need to generate graphical output in any of bitmap format under the 'R
CMD BATCH'. Whereas the script generating png-s works perfectly in the
R session, such things as X11, png an
Brian,
On Feb 11, 2005, at 4:14 PM, Prof Brian Ripley wrote:
The problem rather is that if R_CheckUserInterrupt is so expensive, we
need to redesign it, for it should not be
I agree, that's why I named it a 'quick fix'. Unfortunately a more
'proper' fix is far from trivial.
Talking of handling i
On Feb 10, 2005, at 7:38 PM, George W. Gilchrist wrote:
Today I was running a graduate level stats lab using R and we
encountered a
major problem while using the current build of the Cocoa GUI:
From the GUI:
system.time(pbinom(80, 1e5, 806/1e6))
[1] 14.37 4.94 30.29 0.00 0.00
From the comman
On Feb 9, 2005, at 12:21 PM, Paul Roebuck wrote:
On Wed, 9 Feb 2005, Kurt Hornik wrote:
I think the simplest way to achieve this is to configure R
locally (for yourself) with CFLAGS="-O2 -Wall -pedantic" but
leave the corresponding PKG_CFLAGS etc variables in package
src/Makevars alone.
I can do th
On Jan 19, 2005, at 5:39 PM, Prof Brian Ripley wrote:
There is _no_ tm_tzone component in a POSIX nor C99 tm structure (and
I have just checked both), so if a system requires it to be set, the
bug is not in R but in the standards-compliance of the system.
I am happy to zero the structure, much l
Don,
thanks for your report.
On Jan 19, 2005, at 12:41 PM, Don MacQueen wrote:
I'm encountering a problem formatting POSIXct objects in R 2.0.1 on OS
X.
For reference, on a Solaris system, R 2.0.1 (2004-11-15), formatting
is correct:
Sys.time()
[1] "2005-01-19 09:12:33 PST"
format(Sys.time(),
Current R-devel doesn't compile on OS X, because "-framework Carbon"
was (correcly) removed main_ldflags, but it was not added to flags for
grDevices, where it is needed now. The following tiny patch remedies
the issue (it is sufficient to include AppKit as only that subset of
Carbon is needed)
On Dec 29, 2004, at 2:06 PM, Whit Armstrong wrote:
The reason I need help with Makevars is because it needs jni.h from the
user's JAVA_HOME/include and jni_md.h from the user's
JAVA_HOME/include/OS_TYPE directory.
In addition, it needs libjvm.so from the user's
JAVA_HOME/jre/lib/ARCH/client directo
On Dec 20, 2004, at 10:20 AM, Marc Schwartz wrote:
I was just curious if anyone from R Core might comment on the nature
and
scope of the cooperation, as I could not find anything at the Gnumeric
web site on this.
I don't know about that, either, but as of R and Gnumeric i know that
Duncan was wor
On Dec 17, 2004, at 11:00 AM, [EMAIL PROTECTED] wrote:
I loaded the binary for R, and most things work fine. The plot command
defaults to a postscript file. If I type X11(), I get a message the
X11 failed to load. However if I type capabilities(what="X11") I get
TRUE back.
What do I need to do
Brian,
thanks for the useful hints! In fact, that code features several
interesting techniques.
While reading one of the related docs I stumbled upon a slight problem
in the UserHooks {base} docs:
pkgname character string: the package/namespace name. If versioned
install has been used, pkgname
On Nov 28, 2004, at 11:58 PM, Gabor Grothendieck wrote:
Quite so but unfortunately if I want to produce a script
that has no dependencies then I need to use what is provided
in Windows and Windows batch commands seem to be the best
way to do that.
Batch scripts are also quite dependent on the syste
Thank you all for your replies. I wrapped the reference in a LISTSXP
and everyone's happy (I know that the docs say one ought to do so right
away, but I was curious what breaks ;)).
On Oct 30, 2004, at 5:55 PM, Peter Dalgaard wrote:
Anyways, Tcl objects do provide a rather nice illustration of w
I have encountered a strange behavior of the str function - it seems to
modify the object that is displayed. Probably I'm using something
unsupported (objects consisting just of an external reference), but
still I'm curious as of why this happens. I create (in C code)
EXTPTRSXP and associate a
t should perform the R installation without errors. Since I don't
know what goes on with the libxml package, you could try it on that
one, too.
Cheers,
Simon
---
Simon Urbanek
Department of computer oriented statistics and data analysis
University of Augsburg
Universitätsstr. 14
86135
On Aug 19, 2004, at 6:30 PM, [EMAIL PROTECTED] wrote:
Was running R 1.9.0 on iMac (10.2.8) without problems. Tried to run
installer
for 1.9.1, but this stops after only several seconds, saying "There
were
problems installing the software." Problem is repeatable, even after
repairing file permis
On Jul 31, 2004, at 9:15 PM, Jan de Leeuw wrote:
[cabledoc70:Developer/R/R-devel] deleeuw% bin/R
Error in lazyLoadDBfetch(key, datafile, compressed, envhook) :
internal error in decompress1
I forgot to post it here, but the problem I had was in libz (thanks to
Luke for some tips). When I u
not compiled of course) ... Solving the above would allow us to
provide binary packages for both platforms OS X and Windows using just
one machine to automatically generate both... (for those interested I
could put the cross-compile tools on my pages..)
Any help is appreciated,
Simon
---
Simon
I the course of cleaning up the build for OS X I wondered why R
requires zlib 1.2.1+. Is there any specific reason for that? OS X comes
with zlib 1.1.4, so I wonder if using the system library has any
drawbacks... (it worked for me, but..). I found nothing in the
archives, but maybe someone rem
the INSTALL:
You need the following in your path (with the first two first):
.
our toolset
mingw\bin
Perl\bin
the latex bin directory
zip.exe, unzip.exe, hhc.exe
And, please, this is not a bug in R, so don't post it in R-bugs!
Cheers,
Simon
---
Simon Urbanek
Department of compu
On Jul 15, 2004, at 6:56 PM, [EMAIL PROTECTED] wrote:
Full_Name: A.Boodoo
Version: 1.9.1
OS: MacOS X 10.2.8
Submission from: (NULL) (217.35.120.113)
Same problem identified as in report 7036
please don't open new bug reports, especially when you say that it's
the same as an existing bug.
- R icon
I tried to compile R (current R-patched to be more precise) with gcc
3.5 by Apple (which will be probably shipped with Tiger) and here's how
far I got:
1) compilation itself was fine except for one exception:
../../../../../../R-patched/src/library/stats/src/starma.c: In function
`forkal':
../.
On Jul 11, 2004, at 1:07 PM, Frank E Harrell Jr wrote:
The Hmisc package has in its .First.lib function a verbose argument,
which I thought was the way to allow users to suppress certain
messages,
by issuing library(Hmisc, verbose=FALSE). But I see that library( )
does not pass verbose to .First.
On Jul 1, 2004, at 6:09 AM, Douglas Bates wrote:
AS_NUMERIC in C more closely corresponds to as.double() in R
All that as.numeric() in R does is assure that the result is of a
numeric mode. It does not coerce integer variables to doubles.
Um... are you sure?? For the sake of lots of code I saw I
On Jul 1, 2004, at 6:10 PM, [EMAIL PROTECTED] wrote:
Full_Name: Matthew Krause
Version: 1.9.1
OS: Mac OS 10.3.4
Submission from: (NULL) (194.78.187.114)
dyld: /usr/bin/open version mismatch for library:
/usr/local/lib/libxml2.2.dylib
(compatibility version of user: 9.0.0 greater than library's ver
On Jun 26, 2004, at 9:41 AM, stefano iacus wrote:
> Thanks for raising this problem. I agree, the installer should not
> change the permissions on /Applications (but user can decide to
> install the application somewhere else and move it to /Applications
> later as a temporary solution)
I'd s
On Jun 26, 2004, at 9:41 AM, stefano iacus wrote:
Thanks for raising this problem. I agree, the installer should not
change the permissions on /Applications (but user can decide to
install the application somewhere else and move it to /Applications
later as a temporary solution)
I'd say that it
On Jun 16, 2004, at 12:08 PM, Philippe Grosjean wrote:
P.S.: I am also concerned about JGR, because it is also not GPL. Any
comment?
All C code in JGR is GPL. Tha Java parts talking to R directly (JavaGD,
Rengine) are, too. From what you posted here this seems to be
sufficient. As of the other Ja
. Any thoughts on this? (btw: aqua uses a hack
to circumvent this... whenever aqua needs a hack it may be worth
thinking about something more general ;))
Cheers,
Simon
---
Simon Urbanek
Department of computer oriented statistics and data analysis
University of Augsburg
Universitätsstr. 14
86135 A
ell us exactly which of the many versions of R GUI
(raw stdin, readline, Tcl/Tk, Gtk, ...) you actually mean - since they
use different event loops ...
OT: Did you have a look at
http://wsopuppenkiste.wiso.uni-goettingen.de/~dadler/rgl/ ? Although
its' not really a GD, it provides a kind o
ly since this
is runtime-dependent, because in the editor you don't even know which
packages are loaded at run-time ...
---
Simon Urbanek
Department of computer oriented statistics and data analysis
University of Augsburg
Universitätsstr. 14
86135 Augsburg
Germany
Tel: +49-821-598-2236
Fax: +49
an
interesting, flexible alternative. I know that the project is all but
easy, nevertheless I believe that we got quite far by now.
Simon
---
Simon Urbanek
Department of computer oriented statistics and data analysis
University of Augsburg
Universitätsstr. 14
86135 Augsburg
Germany
Tel: +49-821-59
too. We are of
course open for any further ideas or wishes. The official release is
planned for the useR! 2004 conference in Vienna.
Simon
---
Simon Urbanek
Department of computer oriented statistics and data analysis
University of Augsburg
Universitätsstr. 14
86135 Augsburg
Germany
Tel: +49-8
t for the help
files that were not built, afaik.
Simon
---
Simon Urbanek
Department of computer oriented statistics and data analysis
Universitätsstr. 14
86135 Augsburg
Germany
Tel: +49-821-598-2236
Fax: +49-821-598-2280
[EMAIL PROTECTED]
http://simon.urbanek
On Feb 19, 2004, at 2:55 AM, stefano iacus wrote:
I've just committed a new version of the quartz device to R-devel.
This seems to fix the problem with displaying math symbols in plots
under Panther.
I gave it a shot on a Jag machine (darwin 6.8), here are my results.
I can't not more test R und
On Feb 14, 2004, at 8:19 PM, Paul Murrell wrote:
I have added fontfamily to the "graphics context" information that can
be passed from the graphics engine to graphics devices. Two rather
important things remain to be done:
(i) the devices need to do something with this information. As Duncan
mily name - I
just didn't check yet which parameter is used to set it (fontfamily?).
Cheers,
Simon
---
Simon Urbanek
Department of computer oriented statistics and data analysis
University of Augsburg
Universitätsstr. 14
86135 Augsburg
Germany
Tel: +49-821-598-2236
Fax: +49-821-598-2200
[E
et in stone or are there any further plans to
change the API? (If so, how far?) Also, is there any 'recommended' or
'official' way to provide compatibility (beside using wrappers in
various #ifdef's..)?
Thanks,
Simon
---
Simon Urbanek
Department of computer oriente
r program. But before you plunge
into writing some Win apps that interface to R, you should definitely
look at other projects that use R.dll - there is a lot of issues you
should be aware of, especially involving the initialization of R (Win32
version has no Rf_initEmbeddedR).
Cheers,
Simo
On Dec 30, 2003, at 4:37 PM, [EMAIL PROTECTED] wrote:
Full_Name: Steve Koehler
Version: 1.8.1
OS: Solaris and Windows
Submission from: (NULL) (192.55.214.50)
In the following program, if output is sent to X11, you get all four
graphs,
but if output is sent to .jpeg, you only get the C and D graph
arwin7.2.0
arch powerpc
os darwin7.2.0
system powerpc, darwin7.2.0
status Under development (unstable)
major1
minor9.0
year 2003
month12
day 22
language R
---
Simon Urbanek
Department of computer oriented statistics and data analysis
Universi
m
Carbon
in this way is important, and you don't have to learn Objective C to
program in Cocoa.
I guess that Quartz in Carbon is ok for now, because it actually
doesn't use almost anything from Carbon except for the window creation
routines ;). Everything else (especially widgets &
On Nov 29, 2003, at 9:33 PM, Prof Brian Ripley wrote:
On Sat, 29 Nov 2003, Simon Urbanek wrote:
BTW: This is not Mac specific - I was fighting this on Windows (and
unix for that matter) as well - it is possible to run an .exe linked
to
R.dll from anywhere, if R.dll is in the PATH. But then, one
might look into issues like using Tcl/Tk, placing libraries
conveniently (in ~/Library/Application Support/R/library ?) etc.
---
Simon Urbanek
Department of computer oriented statistics and data analysis
Universitätsstr. 14
86135 Augsburg
Germany
Tel: +49-821-598-2236
Fax: +49-821-598-2280
[EMAIL
Additional capabilities: bzip2, PCRE
Options enabled: shared library, R profiling
Recommended packages: yes
configure: WARNING: I could not determine SHLIB_CXXLDFLAGS
---
Simon Urbanek
Department of computer oriented statistic
lid Address specified to RtlSizeHeap( 003F, 0146008 )
and later a crash somewhere deep in libwsock32 (the trace is rather
weird) ... I guess the problem is the heap, not wsock itself. Any idea
what that could be?
All the above was tested with MinGW-3.1.
Any ideas? Is that a MinGW bug or something
On Saturday, October 4, 2003, at 04:05 PM, Duncan Murdoch wrote:
It compiles fine in 3.3.1 with change 2). I'll commit the change. I
don't have 3.2.3 installed to test there, so could you try a build
soon Simon?
Thank you, Duncan, it compiles fine with MinGW 3.1.0-1 (@Peter: it uses
[modified]
On Friday, October 3, 2003, at 07:34 PM, Uwe Ligges wrote:
Some thoughts:
The first suggested fix seems to be forbidden during code freeze
(might break other platforms, doesn't it?), the second one puts one
more OS dependence into the sources.
The neither fix affects any platform except for Win3
MinGW 3.1.0-1 is currently the latest official MinGW release, therefore
I tried to compile the latest R beta (rsync today). There is one minor
problem when trying that:
gcc -O2 -Wall -pedantic -I../../include -I../../gnuwin32
-DHAVE_CONFIG_H -c internet.c -o internet.o
In file included from i
On Tuesday, September 30, 2003, at 03:42 PM, Marsland, John wrote:
necessary for win32 systems. I got more interested when I started
thinking
about Rpvm and all the spare win32 boxes sitting around - curently this
package only works for unix/linux systems. My guess is that an awful
lot
more of t
On Sunday, September 14, 2003, at 06:01 PM, Ole Sieling wrote:
Hello,
I have compiled R-1.7.1 on Beos R5 (x86) and got it running.
The modules x11 and internet dont work (so the only working display is
postscript()).
The libraries all compile, but there is a problem with methods.
I get the followi
On Wednesday, September 17, 2003, at 06:51 PM, Marsland, John wrote:
It concerns trival diagonal matrices:
[...]
diag(rnorm(1))
<0 x 0 matrix>
diag(rnorm(1),nrow=1)
[,1]
[1,] 0.4843697
There's an obvious work around... but I thought it was worth notifying
the
list.
I fail to see any re
function returns almost immediately and is
called again ... so in effect you are hogging 100% CPU. I'd suggest
using either some sensible timeout or kEventDurationForever.
Cheers,
Simon
---
Simon Urbanek
Department of computer oriented statistics and data analysis
Universitätsstr. 14
86135 Au
elper docs it says that one should
simply run autoconf .. but then such issues as the above won't become
visible as autoconf doesn't call aclocal, whereas e.g. autoreconf does
...). So, how is the 'official' configure created?
---
Simon Urbanek
Department of computer oriented
On Friday, August 29, 2003, at 12:11 PM, Peter Dalgaard BSA wrote:
Simon Urbanek <[EMAIL PROTECTED]> writes:
I think that something along the lines of a "light" REventLoop (i.e.
[...]
tricks. So, are there plans to replace the current REPL soon?
(preferably in 1.8 ;)). If n
back for those
who don't) and the above is fairly easy to implement in pthreads (and
compatible) as well as Windows.
I'm willing to provide code for the latter approach or to help with the
first one if necessary.
Cheers,
Simon
---
Simon Urbanek
Department of computer oriented s
"s/.*\.\([^.][^.]*$\)/\1/"`
+DYLIB_EXT=".so.${PACKAGE_VERSION_MAJOR}.${PACKAGE_VERSION_MINOR}"
;;
esac
Of course you'll need to re-run autoconf after patching.
Again, this is untested since I have no OpenBSD box here.
Cheers,
Simon
---
Simon Urbanek
Department of
ed library cannot be found (and the package
'methods' is the first to attempt to load an external shlib in R). You
may want to check how your platform uses dlsym and also check the
linker flags for module libraries. This is just a hint, I have no
OpenBSD box here to test it.
Cheers,
S
equire that (and
probably have to). G77 is really just a few files, so the installer
could add it if necessary, but I'm not sure about latex. Is building
packages w/o latex documentation an option? The direct use of source
packages seems to me as the greatest benefit of OSX being unix-ba
pply it
simply with R - such as pcre etc., all other libraries are optional.
Cheers,
Simon
---
Simon Urbanek
Department of computer oriented statistics and data analysis
University of Augsburg
Universitätsstr. 14
86135 Augsburg
Germany
Tel: +49-821-598-2236
Fax: +49-821-598-2200
[EMAIL PROTE
o the two processes
communicate?
4) The GUI should set the option to make "quartz" the default device
(so far options(device="quartz") works quite well).
Cheers,
Simon
---
Simon Urbanek
Department of computer oriented statistics and data analysis
University of Augsburg
Univer
2003
month03
day 17
Cheers
Simon
---
Simon Urbanek
Department of computer oriented statistics and data analysis
University of Augsburg
Universitätsstr. 14
86135 Augsburg
Germany
Tel: +49-821-598-2236
Fax: +49-821-598-2280
[EMAIL PROTECTED]
http://simon.urbanek.info
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