[R] Error in check(itp) : ‘object’ do es not represent a K sample problem with censored data

2008-11-29 Thread Bob Green
Hello, I have two questions regarding a survival analysis I have been working on. Below is the code to date. The variables: 1) recidivism$intDaysUntilFVPO are the number of days before an violent offence was committed - if no offence was committed than the days between court hearing and

[R] Subset by string name?

2008-11-29 Thread Ophelia Wang
Hi all, I thought this should be very simple, but I'm not sure where the problem is. I have a .txt data file that contains X and Y coordinates of trees and their family names: X Y Mark 0 28 Sapotaceae 1 30 Meliaceae 1 40 Meliaceae 1 60 Mimosaceae

Re: [R] Subset by family name?

2008-11-29 Thread Ophelia Wang
Sorry to bother everyone---I realized I should have used == instead of = in the subset syntax! Quoting Ophelia Wang [EMAIL PROTECTED]: Hi all, I thought this should be very simple, but I'm not sure where the problem is. I have a .txt data file that contains X and Y coordinates of trees and

Re: [R] Examples of advanced data visualization

2008-11-29 Thread Johannes Huesing
Tom Backer Johnsen [EMAIL PROTECTED] [Fri, Nov 28, 2008 at 10:13:04PM CET]: Hans W. Borchers wrote: [...] Please answer to my e-mail address. In case enough interesting material comes up, I will enter a summary here. It is nice that you are willing to summarize whatever appears, but

[R] Using grep() to subset lines of text

2008-11-29 Thread ppaarrkk
I have two vectors, a and b. b is a text file. I want to find in b those elements of a which occur at the beginning of the line in b. I have the following code, but it only returns a value for the first value in a, but I want both. Any ideas please. a = c(2,3) b = NULL b[1] = aaa 2 aaa b[2] =

Re: [R] Using grep() to subset lines of text

2008-11-29 Thread Gabor Grothendieck
Try this: a - 2:3 b - c(aaa 2 aaa, 2 aaa, 3 aaa, aaa 3 aaa) re - paste(^(, paste(a, collapse = |), ), sep = ) re [1] ^(2|3) grep(re, b, value = TRUE) [1] 2 aaa 3 aaa On Sat, Nov 29, 2008 at 7:00 AM, ppaarrkk [EMAIL PROTECTED] wrote: I have two vectors, a and b. b is a text file. I want

Re: [R] Examples of advanced data visualization

2008-11-29 Thread Hans W. Borchers
Tom Backer Johnsen backer at psych.uib.no writes: [...] The question is interesting, but what I have a somewhat negative reaction to is the next passage: Please answer to my e-mail address. In case enough interesting material comes up, I will enter a summary here. It is nice that

Re: [R] Subset by string name?

2008-11-29 Thread jim holtman
You need Yut_are - subset (Yut, Mark==Arecaceae, select=c(X, Y, Mark)) for equality test (two ==) On Sat, Nov 29, 2008 at 5:22 AM, Ophelia Wang [EMAIL PROTECTED] wrote: Hi all, I thought this should be very simple, but I'm not sure where the problem is. I have a .txt data file that contains

[R] how to input a string without quote

2008-11-29 Thread Jinsong Zhao
Hi there, I hope to use a string as an input in my function, however, I don't want to input the quotation mark. Is it possible? Thanks in advance. Regards, Jinsong __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help

[R] 2D density tophat

2008-11-29 Thread Aaron Robotham
Hello R users, I have successfully created a square (or more generally, rectangular) tophat smoothing routine based on altering the already available KDE2D. I would be keen to implement a circular tophat routine also, however this appears to be much more difficult to write efficiently (I have a

[R] how to input a string without quote

2008-11-29 Thread Jinsong Zhao
Hi there, I hope to use a string as an input in my function, however, I don't want to input the quotation mark. Is it possible? Thanks in advance. Regards, Jinsong __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help

Re: [R] how to input a string without quote

2008-11-29 Thread Gabor Grothendieck
This works if you type it in from the R console: s - readline() this is my string s [1] this is my string On Sat, Nov 29, 2008 at 9:41 AM, Jinsong Zhao [EMAIL PROTECTED] wrote: Hi there, I hope to use a string as an input in my function, however, I don't want to input the quotation

[R] chron and R 2.8

2008-11-29 Thread stephen sefick
has anyone had problems with the upgrade to R 2.8 and chron date classes. I have a large zoo object that has a chron index, and it is taking 5x or so longer to do the same calculation as with 2.7 if it doesn't fail. I will provide anything necessary I am not entirely sure what ya'll would need

Re: [R] chron and R 2.8

2008-11-29 Thread Gabor Grothendieck
Are you using the same version of chron both times? On Sat, Nov 29, 2008 at 10:05 AM, stephen sefick [EMAIL PROTECTED] wrote: has anyone had problems with the upgrade to R 2.8 and chron date classes. I have a large zoo object that has a chron index, and it is taking 5x or so longer to do the

Re: [R] Examples of advanced data visualization

2008-11-29 Thread Stavros Macrakis
On Fri, Nov 28, 2008 at 4:13 PM, Tom Backer Johnsen [EMAIL PROTECTED]wrote: Hans W. Borchers wrote: ...The question is interesting, but what I have a somewhat negative reaction to is the next passage: Please answer to my e-mail address. In case enough interesting material comes up, I will

Re: [R] Using grep() to subset lines of text

2008-11-29 Thread Stavros Macrakis
Hmm, this brings up an interesting question. What if the string I'm looking for contains escape characters? For example, grep( paste( ^, (ab) ), c(ab,(ab)) ) = c(1), not c(2). I couldn't find an equivalent to Emacs's regexp-quote, which would let me write regexp.quote((ab)) = \\(ab\\). The

Re: [R] optimization problem

2008-11-29 Thread Ben Bolker
tedzzx zengzhenxing at gmail.com writes: Hi, all I am facing an optimization problem. I am using the function optim(par,fun), but I find that every time I give different original guess parameter, I can get different result. For example I have a data frame named data: head(data)

Re: [R] LaTeX and R-scripts/-results

2008-11-29 Thread Oliver Bandel
Hello Thomas (and all), Zitat von Thomas Petzoldt [EMAIL PROTECTED]: Oliver Bandel wrote: Hello, at some places I read about good interaction of LaTeX and R. Can you give me a starting point, where I can find information about it? Are there special LaTeX-packages for the

Re: [R] Using grep() to subset lines of text

2008-11-29 Thread Gabor Grothendieck
grep has a fixed = TRUE argument if you want to ignore all regexp's. On Sat, Nov 29, 2008 at 3:55 PM, Stavros Macrakis [EMAIL PROTECTED] wrote: Hmm, this brings up an interesting question. What if the string I'm looking for contains escape characters? For example, grep( paste( ^, (ab) ),

[R] Reading mixed tables

2008-11-29 Thread Hesen Peng
Dear R buddies, This weekend I became interested in solving Google Code Jam problems using R. I guess R may work very well in this kind of contests but the input of file has been a problem for me. Take this case for example

[R] Snow and multi-processing

2008-11-29 Thread Blanchette, Marco
Dear R gurus, I have a very embarrassingly parallelizable job that I am trying to speed up with snow on our local cluster. Basically, I am doing ~50,000 t.test for a series of micro-array experiments, one gene at a time. Thus, I can easily spread the load across multiple processors and nodes.

Re: [R] Reading mixed tables

2008-11-29 Thread David Winsemius
Have you looked at the documentation and help files for R Import/Export; http://cran.r-project.org/doc/manuals/R-data.pdf and the read functions ?read.table ?readLines ?count.fields This is pretty basic stuff. After an extremely cursory look at that problem I was guessing that it is more

Re: [R] Reading mixed tables

2008-11-29 Thread Hesen Peng
Yes. I'm just for killing time in the rainy weekend. Now I'm using readLines() to read the file and then output the data as a list. google.read.list - function(filename){ temp - readLines(filename) out - NULL tt - NULL for(i in 1:length(temp)){ strin - as.numeric(strsplit(temp[i],

Re: [R] Reading mixed tables

2008-11-29 Thread Gabor Grothendieck
Try this. First we read it in using fill = TRUE so that lines with one number get filled out with NAs. The first line is T so assign first cell to T and create DF0 which does not have that line. Then split the data into a list of data frames starting each group at the line with the NA in column

[R] selectively importing functions etc. from files

2008-11-29 Thread Faheem Mitha
Hi, If I want to import the contents of a R file into another one, I can do source(foo.R) However, this imports everything from foo.R, including all functions and global variables. Is there a way of selectively importing individual functions etc., in a similar fashion to Python's from foo

Re: [R] Snow and multi-processing

2008-11-29 Thread Martin Morgan
Hi Marco -- Do you know about Bioconductor, http://bioconductor.org ? The rowttests function in the genefilter package will do what you want efficiently and on a single node. # install the package source('http://bioconductor.org/biocLite.R') biocLite('genefilter') # do 500k t-tests

Re: [R] Reading mixed tables

2008-11-29 Thread Hesen Peng
That's a very good idea! Thanks a lot. On Sat, Nov 29, 2008 at 9:13 PM, Gabor Grothendieck [EMAIL PROTECTED] wrote: Try this. First we read it in using fill = TRUE so that lines with one number get filled out with NAs. The first line is T so assign first cell to T and create DF0 which does

Re: [R] Using grep() to subset lines of text

2008-11-29 Thread Stavros Macrakis
But I don't want to ignore all regexp's -- I want to build a regexp which contains string components which are parameters. -s On Sat, Nov 29, 2008 at 6:51 PM, Gabor Grothendieck [EMAIL PROTECTED] wrote: grep has a fixed = TRUE argument if you want to ignore all regexp's. On Sat,

[R] help: unbalanced repeated measures

2008-11-29 Thread Sumitrajit Dhar
Hi folks, I am trying to figure out how run a repeated measures ANOVA on the following data set. subject trial frequency dplvl 1 FSI052A A 1NA 2 FSI052B B 1NA 3 FSI053A A 1NA 4 FSI055A A 1NA 5 FSI055B B 1

Re: [R] Using grep() to subset lines of text

2008-11-29 Thread Gabor Grothendieck
Try this. For each character x in s, if x is punctuation it is replaced with \\x otherwise with [x] : library(gsubfn) gsubfn('.', ~ if (any(grep([[:punct:]], x))) paste0('\\', x) else paste0('[', x, ']'), s) See http://gsubfn.googlecode.com On Sat, Nov 29, 2008 at 10:09 PM, Stavros Macrakis

Re: [R] confidence interval for glm

2008-11-29 Thread David Winsemius
?confint.glm # ... in MASS On Nov 28, 2008, at 9:29 AM, Gerard M. Keogh wrote: Hi all, simple Q: how do I extract the upper and lower CI for predicted probabilities directly for a glm - I'm sure there's a one line to do it but I can't find it. the predicted values I get with the

Re: [R] how to input a string without quote

2008-11-29 Thread Yihui Xie
Wow, you are so lazy... But sometimes R is just designed for lazy guys... ## f = function(a) { s = substitute(a) as.character(s) } ## f(a = asdf) [1] asdf f(qwer) [1] qwer Regards, Yihui -- Yihui Xie [EMAIL PROTECTED] Phone: +86-(0)10-82509086 Fax: +86-(0)10-82509086 Mobile:

Re: [R] Examples of advanced data visualization

2008-11-29 Thread Yihui Xie
For the motion chart, I've written a quick example in R (for the Brownian Motion): ## put random numbers in Google API # n: number of movie frames # p: number of points g.brownian.motion = function(n = 50, p = 20, start = 1900, digits = 14, file = brownian.motion.html, width = 800, height