Re: [R] No P.values in polr summary

2013-10-19 Thread Prof Brian Ripley
On 18/10/2013 15:01, Vincent Guyader wrote: Hi everyone, If I compute a Ordered Logistic or Probit Regression with the polr function from MASS package. the summary give me : coefficients, Standard error and Tvalue.. but not directly the p.value. I can compute manualy the Pvalue, but Is there

[R] fitting a random gamma sample into the weibull distribution

2013-10-19 Thread Charles Thuo
require(MASS) n- 10 n [1] 1e+05 w- rgamma(n,rate=0.5,shape=5);head(w) [1] 14.135679 18.839336 6.623502 17.165505 2.847572 7.511726 fit.w- fitdistr(w,weibull) Warning messages: 1: In densfun(x, parm[1], parm[2], ...) : NaNs produced 2: In densfun(x, parm[1], parm[2], ...) : NaNs

[R] ivreg with fixed effect in R?

2013-10-19 Thread Ignacio Martinez
I want to estimate the following fixed effect model: y_i,t = alpha_i + beta_1 x1_t + beta_2 x2_i,tx2_i,t = gamma_i + gamma_1 x1_t + gamma_2 Z1_i + gamma_3 Z2_i I can use ivreg from AER to do the iv regression. fm - ivreg(y_i,t ~ x1_t + x2_i,t |x1_t + Z1_i + Z2_i, data =

Re: [R] ivreg with fixed effect in R?

2013-10-19 Thread Achim Zeileis
On Sat, 19 Oct 2013, Ignacio Martinez wrote: I want to estimate the following fixed effect model: y_i,t = alpha_i + beta_1 x1_t + beta_2 x2_i,tx2_i,t = gamma_i + gamma_1 x1_t + gamma_2 Z1_i + gamma_3 Z2_i I can use ivreg from AER to do the iv regression. fm - ivreg(y_i,t ~ x1_t + x2_i,t |

Re: [R] saveXML() prefix argument

2013-10-19 Thread Milan Bouchet-Valat
Le vendredi 18 octobre 2013 à 13:27 -0400, Earl Brown a écrit : Thanks Duncan. However, now I can't get the Spanish and Portuguese accented vowels to come out correctly and still keep the indents in the saved document, even when I set encoding = UTF-8: library(XML) concepts - c(español,

Re: [R] ivreg with fixed effect in R?

2013-10-19 Thread Ignacio Martinez
Thanks. One more question. When I do summary to see the coefficients how can i tell R to print just some of the coefficients? Thanks again On Sat, Oct 19, 2013 at 7:29 AM, Achim Zeileis achim.zeil...@uibk.ac.atwrote: On Sat, 19 Oct 2013, Ignacio Martinez wrote: I want to estimate the

Re: [R] ivreg with fixed effect in R?

2013-10-19 Thread Achim Zeileis
The summary currently doesn't provide this feature. But you can use something like coeftest(obj)[1:3,] or coeftest(obj)[myreg,] or something like that... (sent from mobile phone) Original message From: Ignacio Martinez ignaci...@gmail.com Date: To: Achim Zeileis

[R] Fortune?, was Re: Recovering object names when using the ... argument in a fn XXXX

2013-10-19 Thread Michael Dewey
At 19:05 18/10/2013, William Dunlap wrote: However, I do not understand the substitute(...()) idiom. Would you care to explain it? (No is an acceptable answer!). I don't completely understand it either, I treat it as an idiom. I saw it on this list once. Bill Dunlap Spotfire, TIBCO

Re: [R] fitting a random gamma sample into the weibull distribution

2013-10-19 Thread David Winsemius
On Oct 19, 2013, at 2:26 AM, Charles Thuo wrote: require(MASS) n- 10 n [1] 1e+05 w- rgamma(n,rate=0.5,shape=5);head(w) [1] 14.135679 18.839336 6.623502 17.165505 2.847572 7.511726 fit.w- fitdistr(w,weibull) Warning messages: 1: In densfun(x, parm[1], parm[2], ...) : NaNs produced

Re: [R] No P.values in polr summary

2013-10-19 Thread vincent guyader
2013/10/19 Prof Brian Ripley rip...@stats.ox.ac.uk On 18/10/2013 15:01, Vincent Guyader wrote: Hi everyone, If I compute a Ordered Logistic or Probit Regression with the polr function from MASS package. the summary give me : coefficients, Standard error and Tvalue.. but not directly the

Re: [R] Fortune?, was Re: Recovering object names when using the ... argument in a fn XXXX

2013-10-19 Thread Achim Zeileis
On Sat, 19 Oct 2013, Michael Dewey wrote: At 19:05 18/10/2013, William Dunlap wrote: However, I do not understand the substitute(...()) idiom. Would you care to explain it? (No is an acceptable answer!). I don't completely understand it either, I treat it as an idiom. I saw it on

[R] Extracting AICc and BIC from an ARIMA model.

2013-10-19 Thread Chris89
Hi everyone! I am making some time series models, and as i want to compare a lot of models I thought it would be smart to compare the AIC, AICc and BIC values from the models. My question is, how can I extract the BIC and AICc from the model? As an example: kings -

Re: [R] Recovering object names when using the ... argument in a fn XXXX

2013-10-19 Thread Duncan Murdoch
On 13-10-18 1:54 PM, Bert Gunter wrote: Yes, similar, but better, as match.call() will get unwanted named arguments, too. However, I do not understand the substitute(...()) idiom. Would you care to explain it? (No is an acceptable answer!). I suspect it's a bug, though I can't see it's one

Re: [R] Extracting AICc and BIC from an ARIMA model.

2013-10-19 Thread David Winsemius
On Oct 19, 2013, at 3:44 AM, Chris89 wrote: Hi everyone! I am making some time series models, and as i want to compare a lot of models I thought it would be smart to compare the AIC, AICc and BIC values from the models. My question is, how can I extract the BIC and AICc from the model?

[R] loop not working my way

2013-10-19 Thread laz
Dear R users, Suppose I want to randomly generate some data, in matrix form, randomly swap some of the elements and calculate trace of the matrix for each of these stages. If the value of trace obtained in the later is bigger than the former, drop the latter matrix and go back to the former

Re: [R] Extracting AICc and BIC from an ARIMA model.

2013-10-19 Thread David Winsemius
On Oct 19, 2013, at 10:32 AM, David Winsemius wrote: On Oct 19, 2013, at 3:44 AM, Chris89 wrote: Hi everyone! I am making some time series models, and as i want to compare a lot of models I thought it would be smart to compare the AIC, AICc and BIC values from the models. My question

Re: [R] Extracting AICc and BIC from an ARIMA model.

2013-10-19 Thread Rui Barradas
Hello, Em 19-10-2013 19:07, David Winsemius escreveu: On Oct 19, 2013, at 10:32 AM, David Winsemius wrote: On Oct 19, 2013, at 3:44 AM, Chris89 wrote: Hi everyone! I am making some time series models, and as i want to compare a lot of models I thought it would be smart to compare the

Re: [R] loop not working my way

2013-10-19 Thread Rui Barradas
Hello, Seems simple. fun - function(n = 10){ matd - matrix(sample(1:30,30, replace=FALSE), ncol=5, nrow=6) res - list(mat = NULL, Design_best = matd, Original_design = matd) trace - sum(diag(matd)) res$mat - rbind(res$mat, c(trace = trace, iterations = 0))

Re: [R] No P.values in polr summary

2013-10-19 Thread Tal Galili
Vincent, I believe Prof. Ripley is referring to this: http://www.stats.ox.ac.uk/pub/MASS4/ Contact Details:--- Contact me: tal.gal...@gmail.com | Read me: www.talgalili.com (Hebrew) | www.biostatistics.co.il (Hebrew) |

Re: [R] loop not working my way

2013-10-19 Thread Laz
Thank you so very much! It works like a charm !!! Regards, Laz On 10/19/2013 5:03 PM, Rui Barradas wrote: fun - function(n = 10){ matd - matrix(sample(1:30,30, replace=FALSE), ncol=5, nrow=6) res - list(mat = NULL, Design_best = matd, Original_design = matd) trace - sum(diag(matd))

[R] blod dot size and name in plot

2013-10-19 Thread eliza botto
Dear useRs,I have the following data z of two variables x(z[,1]) and y(z[,2]). dput(z)structure(c(1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,

[R] bold dot size and name in plot

2013-10-19 Thread eliza botto
Dear useRs, I have the following data z of two variables x(z[,1]) and y(z[,2]). dput(z) structure(c(1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,

Re: [R] bold dot size and name in plot

2013-10-19 Thread Bert Gunter
Follow the posting guide! Code code code. (What you call a dotplot I think is what most of us call a scatterplot. And there are many ways of doing this in R and packages, and we have no idea what you used.) Cheers, Bert On Sat, Oct 19, 2013 at 2:29 PM, eliza botto eliza_bo...@hotmail.com

Re: [R] loop not working my way

2013-10-19 Thread Laz
Dear R users, There is a small problem which I don't know how to sort it out, based on the former example I had explained earlier own. I am calling my own three functions which are based on simulations as below: library(gmp) library(knitr) # load this packages for publishing results

Re: [R] loop not working my way

2013-10-19 Thread Laz
Dear R users, Dear R users, (I had not included two more functions in the previous mail. This version is complete) There is a small problem which I don't know how to sort it out, based on the former example I had explained earlier own. I am calling my own functions which are based on

Re: [R] saveXML() prefix argument

2013-10-19 Thread Earl Brown
Duncan, like what happens with Milan, when I print to the console both the accents and the indents come through correctly. However, when I save to a file, the indents disappear: # when saved to a file the indents disappear saveXML(doc, file = test.xml, encoding = UTF-8) # contents of text.xml

Re: [R] read table and import of a text file

2013-10-19 Thread arun
Hi, No problem. dat1 - subset(head(read.table(temp1.txt,skip=6,sep=,,header=FALSE,fill=TRUE,stringsAsFactors=FALSE),-1),select=1:4)  dat1$V1 - as.numeric(dat1$V1)  str(dat1) #'data.frame':    96409 obs. of  4 variables: # $ V1: num  891231 900101 900101 900101 900101 ... # $ V2: int  2400 100

[R] XML package not working

2013-10-19 Thread Steven Dwayne Randolph
I know I cannot be the only one who is not able to install the XML package from CRAN (zip or tar file) Many packages depend on this XML package. Can someone help me either access the source for a good binary? I have received no assistance from the author/developer of the package. Steven

Re: [R] 'XML' package cannot be un-zipped or un-tar'd

2013-10-19 Thread Steven Dwayne Randolph
Even when I attempt to unzip the file on windows, I get an error that says its not a compressed file. From: Rolf Turner [mailto:rolf.tur...@xtra.co.nz] Sent: Tuesday, October 01, 2013 4:23 PM To: Steven Dwayne Randolph Cc: r-help@r-project.org Subject: Re: [R] 'XML' package cannot be un-zipped

Re: [R] bold dot size and name in plot

2013-10-19 Thread Jim Lemon
On 10/20/2013 08:29 AM, eliza botto wrote: Dear useRs, ... I made a dot plot between them. what i want to do is to bold the size of dots,compared to that of others, for the following ranges ---80x100 and 2y4 ---40x60 and 8y10 ---100x120 and 6y8 Then, i also want to draw square

Re: [R] bold dot size and name in plot

2013-10-19 Thread eliza botto
Dear Denis and jim,Thankyou for your help. eliza Date: Sun, 20 Oct 2013 10:55:05 +1100 From: j...@bitwrit.com.au To: eliza_bo...@hotmail.com CC: r-help@r-project.org Subject: Re: [R] bold dot size and name in plot On 10/20/2013 08:29 AM, eliza botto wrote: Dear useRs, ... I made

Re: [R] XML package not working

2013-10-19 Thread Duncan Murdoch
On 13-10-19 3:47 PM, Steven Dwayne Randolph wrote: I know I cannot be the only one who is not able to install the XML package from CRAN (zip or tar file) Many packages depend on this XML package. Can someone help me either access the source for a good binary? I have received no assistance

Re: [R] XML package not working

2013-10-19 Thread Ista Zahn
On Sat, Oct 19, 2013 at 8:23 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 13-10-19 3:47 PM, Steven Dwayne Randolph wrote: I know I cannot be the only one who is not able to install the XML package from CRAN (zip or tar file) Many packages depend on this XML package. Can someone

[R] Want to create a histogram

2013-10-19 Thread kannan
Dear All, For a report that I am writing, I need to create a histogram plot with x-axis fixed as very bad, bad, fair, good and very good - i.e. the order not changed. Can someone give me an example? For sample purposes, I am giving the following data: 159, 374, 3765, 11388, 6708. Thanks,

Re: [R] Want to create a histogram

2013-10-19 Thread Jim Lemon
On 10/20/2013 11:54 AM, kan...@iitb.ac.in wrote: Dear All, For a report that I am writing, I need to create a histogram plot with x-axis fixed as very bad, bad, fair, good and very good - i.e. the order not changed. Can someone give me an example? For sample purposes, I am giving the

Re: [R] bold dot size and name in plot

2013-10-19 Thread arun
Hi, May be this also helps.  Using ?ggplot() indx - 1 + 2*((z[,1]80 z[,1] 100) (z[,2]2 z[,2] 4)) + 4*((z[,1]40 z[,1] 60) (z[,2]8 z[,2] 10)) + 8*((z[,1]100 z[,1] 120) (z[,2] 6 z[,2] 8))  indx[indx1] - 2 z1-cbind(z,indx) z2 - as.data.frame(z1) colnames(z2)[1:2] - c(x,y) rect1 -

[R] list and -

2013-10-19 Thread Taiyun Wei
Dear All, opt = list() opt$aa - TRUE Error in opt$aa - TRUE : object 'opt' not found Why? -- Regards, Taiyun -- Taiyun Wei weitai...@gmail.com Homepage: http://blog.cos.name/taiyun/ Phone: +86-15201142716 Renmin University of China __