On Sat, Aug 16, 2014 at 9:02 PM, Kate Ignatius
wrote:
> Actually - your code is not wrong... because this is a large file I
> went through the file to see if there was anything wrong with it -
> looks like there are two fathers or three mothers in some families.
> Taking these duplicates out fixe
Thanks for your thoughts, Sarah and Jeff! I do appreciate the time and
effort. I will refrain from posting a link to a GIST as the main part of my
response. But I still like the idea, but I'm going to modify it a bit. For
any replies that I make which are not 3 or 4 lines, I'm going to create a
new
Actually - your code is not wrong... because this is a large file I
went through the file to see if there was anything wrong with it -
looks like there are two fathers or three mothers in some families.
Taking these duplicates out fixed the problem.
Sorry about the confusion! And thanks so much f
Yep - you're right - missing parents are indicated as zero in the M/PID field.
The above code worked with a few errors:
1: In l$PID[l$Relationship == "sibling"] <- l$Sample.ID[father] :
number of items to replace is not a multiple of replacement length
2: In l$PID[l$Relationship == "sibling"] <
Actually - I didn't check this before, but these are not all nuclear
families (as I assumed they were). That is, some don't have a father
or don't have a mother Usually if this is the case PID or MID will
become 0, respectively, for the child. How can the code be edit to
account for this?
On
Thanks!
I think I know what is being done here but not sure how to fix the
following error:
Error in l$PID[l$\Relationship == "sibling"] <- l$Sample.ID[father] :
replacement has length zero
On Sat, Aug 16, 2014 at 6:48 PM, Jorge I Velez wrote:
> Dear Kate,
>
> Assuming you have nuclear fami
On 17/08/14 01:57, Greg Snow wrote:
On Fri, Aug 15, 2014 at 4:06 PM, Rolf Turner wrote:
OTOH R is still lacking a mind_read() function so it probably
would NOT give you *exactly* what you want.
We can try the (very pre-alpha) esp package:
source('g:/R/esp/esp.R')
esp()
[1] "piccalilli cra
Dear Kate,
Assuming you have nuclear families, one option would be:
x <- read.table(textConnection("Family.ID Sample.ID Relationship
14 62 sibling
14 94 father
14 63 sibling
14 59 mother
17 6004 father
17 6003 mother
17 6005 s
Hi,
I have a data.table question (as well as if else statement query).
I have a large list of families (file has 935 individuals that are
sorted by famiy of varying sizes). At the moment the file has the
columns:
SampleID FamilyID Relationship
To prevent from having to make a pedigree file by
On Aug 16, 2014, at 1:54 AM, Lotte de Vries wrote:
snipped all of your and my earlier material because you have included
everything needed for an answer in your current question..
> >
>
> Hi David,
>
> Let me try this again, apologies.
>
> I'm trying to run the package posum
> (http://www.
On Fri, Aug 15, 2014 at 4:06 PM, Rolf Turner wrote:
> OTOH R is still lacking a mind_read() function so it probably
> would NOT give you *exactly* what you want.
We can try the (very pre-alpha) esp package:
> source('g:/R/esp/esp.R')
> esp()
[1] "piccalilli crawlspace mole swarthy thunderhead f
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