By using plotProb(mod.msm,which=2), I could only show the graph of smoothed
probabilities. May I extract smoothed probabilities and filter probabilities
from the msmFit()? thank you very much.
15/9/4 (五)，王柏元 寫道：
主旨: [R] How to get filter probabili
Dear John, Dear List,
Thank you for responding. Like you, I have tried uninstalling R and
reinstalling again. Question 1: having uninstalled R, how do you delete the
package library?
I have used defaults throughout the process, except for running the whole
things as Administrator rather th
The root of your problems lie in your assumption that xts variables act like
data frames. Instead they are matrices with an index attribute. All values in a
matrix must be of the same storage mode.
You might want to investigate the data.table package. It is not a time series
object but you can
Dear all:
I am a rookie in using R. I have a question: How to get filter
probabilities from msmFit() of package MSwM?
following are my code
#Markov Switch Model
library(MSwM)
data(example)
mod<-lm(y~1,example)
mod.msm<-msmFit(mod,k=2,sw=c(T,T))
summary(mod.msm)
plotProb(mod.msm,which=1)
Hello all,
I am an undergraduate, so bare with me if I don't make complete sense!
I have performed a permanova using the function Adonis (vegan), to test for
significant difference in OTU datasets from different species (n=5) at
different sites (n=6) with a total of 20 libraries (unbalanced
On Thu, 2015-09-03 at 16:47 -0400, Ista Zahn wrote:
> Hi Jeff,
> Your chances of getting a useful response will increase if you
> provide
> some additional information. For example, which version of R? Which
> version of ggplot2?
Sorry. R was version 3.2.1
ggplot2 1.0.1
> What sequence of comm
I'd like to edit the GUI preferences for the current (Windows) session via
command line rather than the Edit|GUI preferences menu. In particular, is
there a way to change the pagerstyle to singlewindow without using the menu
or editing the RConsole file?
Any ideas?
Thanks!
-Dan
--
View this m
The file.show() function seems to be exactly what I'm needing for displaying
file contents for users, but I need something like "file.close()" to close
the "R Information" window to clean up afterwards. Does anyone know if there
is such a thing?
-Dan
--
View this message in context:
http://r.7
R, Rstudio and Rcommander work on windows 10 without problems
On 3 Sep 2015 22:11, "Martinez, Stephen Anthony - marti3sa" <
marti...@dukes.jmu.edu> wrote:
> Please forgive me if this is the wrong place to ask or if I missed
> somewhere that it mentions this but I just wanted to make sure, does the
Dear Joyaa,
> -Original Message-
> From: Joyaa Antares [mailto:jo...@goldcoastosteopathy.com.au]
> Sent: September 3, 2015 9:37 PM
> To: Fox, John
> Cc: r-help@r-project.org
> Subject: Re: [R] Unable to run RcmdrPlugin.survival using 3.2.2 with Windows
> 10
>
> Dear John, Dear List,
>
Thanks a lot Jeff and Joshua,
I can see why data.table can be used with dates ( still more work to make it
work :) )
For factors, I was hoping to get a time series of a factor ( values can be only
"abc" or "def" category ) :
2015-09-04 "abc"
2015-09-05 "abc"
2015-09-06 "def"
2015-09-07 "abc"
On Thu, Sep 3, 2015 at 7:40 PM, ce wrote:
>
> Hello
>
> Let's say some questions about merging xts variables :
>
> a<- xts("abc", Sys.Date())
> b <- xts("def", Sys.Date())
> c <- xts(1, Sys.Date())
>
>> merge(a,b)
>a b
> 2015-09-03 "abc" "def"
>> merge(a,b,c)
> a b c
Hello
Let's say some questions about merging xts variables :
a<- xts("abc", Sys.Date())
b <- xts("def", Sys.Date())
c <- xts(1, Sys.Date())
> merge(a,b)
a b
2015-09-03 "abc" "def"
> merge(a,b,c)
a b c
2015-09-03 NA NA 1
Warning messages:
1: In merge.xts(a, b, c)
> On Sep 3, 2015, at 2:03 PM, Jeff Trefftzs wrote:
>
> I just upgraded my laptop from Fedora Core 20 to Fedora Core 22, and
> after the upgrade R can no longer use the ggplot2 library. The
> principal complaint seems to be that libicui18n.so.50 is not found. The
> version of libicu that is inst
Dear Jeff and Stephen,
I can confirm that I'm using R 3.2.2 (and R-devel) on two Windows 10 systems
with no problems whatsoever. As well, although I can't be sure, I doubt that
the problem reported earlier today (concerning the RcmdrPlugin.survival
package) was related to use of Windows 10.
I
To answer my own question. Dono if it's the right way to do... In the
example code I am using a single CPU and it works.
regards
PS. Should I have asked this question on the devel list?
On 2 September 2015 at 14:39, Witold E Wolski wrote:
> I am testing a package with
>
> R CMD check
> and
>
Hi Jeff,
Your chances of getting a useful response will increase if you provide
some additional information. For example, which version of R? Which
version of ggplot2? What sequence of commands produces the error? What
_exactly_ does the error message say?
Does
update.packages(ask=FALSE, checkBui
Apparently yes. Just this morning John Fox said he was using R 3.2.2 on Windows
10. To be fair, he was responding to someone who was having trouble, but as
typical there were no details.
The posting guide does recommend searching the archives before posting.
-
Hi,
You are very close and your understanding is correct - you need to extract the
root node from the XMLDocument returned from xmlTreeParse.
library(XML)
txt <- "\n\n \n\n\n\n\n"
# parse the text tree and extract the root node
obs <- xmlRoot(xmlTreeParse(txt, useInternalNodes = TRUE, asText
Oh sorry F<2 & F<-2 , i need to extract the row value according to the
last two column F,P and using condition ,
I attached an test file to see the data
On Thu, Sep 3, 2015 at 8:43 AM, PIKAL Petr [via R] <
ml-node+s789695n4711787...@n4.nabble.com> wrote:
> Hi
>
> what is F?
>
> F>2 & F<2
> thi
Dear Petr,
This code does not work ?
For selection values you can use e.g. [
data(iris)
sel<-iris$Sepal.Width>4
iris[sel,] or iris[sel, c(1,3,5)]
the data is csv file which is :
FCPval <- read.csv("C:/Users/shawin/Desktop/RProgramms/RAdipose/FCPval.csv")
;
Fc2<-(FCPVal$Fc>=2 | FCPval<=-2); th
dear Pikal , did you receive my last mail ?
On Thu, Sep 3, 2015 at 8:11 AM, PIKAL Petr [via R] <
ml-node+s789695n471178...@n4.nabble.com> wrote:
> Hi
>
> p value of what? How do you know that it should be 0.3?
>
> Your HTML post is mangled and almost unreadable.
>
> Your code is not reproducible,
I just upgraded my laptop from Fedora Core 20 to Fedora Core 22, and
after the upgrade R can no longer use the ggplot2 library. The
principal complaint seems to be that libicui18n.so.50 is not found. The
version of libicu that is installed is version 54. On the other hand,
the same environment ex
Please forgive me if this is the wrong place to ask or if I missed somewhere
that it mentions this but I just wanted to make sure, does the most recent
version of R work on windows 10? I know under the FAQ it says XP or newer but
just wanted to confirm since windows 10 is new.
Thank you!
-Step
I should extract the value according to the condition above
On Thu, Sep 3, 2015 at 7:57 AM, Navien [via R] <
ml-node+s789695n4711782...@n4.nabble.com> wrote:
> Hi all
> I have a csv file and i would like to extract the value of it with
> specific range fof the last column for example; F>2 & F<2 &
All,
I have made it as far as generating an api call which returns the following xml
[1] "\n\n \n\n\n\n\n"
attr(,"Content-Type")
charset
"text/xml" "UTF-8"
following DTL's presentation on the Berkley site and the package help I parsed
the xml
doc = xmlTreeParse(USSW10, asTe
Hi all,
I'm using optimx (version 2013.8.7) to perform parameter estimation with
the nelder-mead method, and received a warning that the parameters are on
different scales, which can hurt optimization performance on derivative
free methods. This warning is accurate as some parameters are small
(b
Bert Gunter gmail.com> writes:
>
> You need to consult a local statistical expert or post on a statistics
> list like stats.stackexchange.com . This is a statistical question
> not an R question.
>
> The answer is: Because the design is balanced and the treatment error
> is obtained from the (
You need to consult a local statistical expert or post on a statistics
list like stats.stackexchange.com . This is a statistical question
not an R question.
The answer is: Because the design is balanced and the treatment error
is obtained from the (within site) rsd, but you will probably need
mor
I put in the matrix at which I want the density as S. I was wondering what
is W then?
Thanks
Anamika
On Thu, Sep 3, 2015 at 12:28 PM, Duncan Murdoch
wrote:
> On 03/09/2015 9:29 AM, Anamika Chaudhuri wrote:
> > Hi All:
> >
> > I am trying to use the dwish function in the MCMCpack in R
> >
> > dw
Dear r-help,
I have a question about the std error of a lmer model with library
(LmerTest).
I have 12 sites with 6 treatments over each site. I measured some response
variable (biomass_of_insects) (with a gaussian distribution).
I did :
library (LmerTest)
model<- lmer((biomass_of_insects) ~ as.f
Since 2008, Revolution Analytics (and now Microsoft) staff and guests have
written about R every weekday at the Revolutions blog:
http://blog.revolutionanalytics.com
and every month I post a summary of articles from the previous month of
particular interest to readers of r-help.
In case you mi
You still failed to post to the list! Please learn how to use your
mail client properly and **always** cc the list.
Anyway, here is an answer (there may be other ways):
> curve(dweibull(x,shape=0.8,scale=1),mgp=c(2,0.3,0),cex.lab=1.2,xlab="t",ylab="f(t)")
> mtext(expression(italic(paste(alpha==1,
On 03/09/2015 12:41 PM, Anamika Chaudhuri wrote:
> I put in the matrix at which I want the density as S. I was wondering
> what is W then?
You need to read the help page. The matrix at which you want the
density is W. S is a parameter of the distribution.
Duncan Murdoch
>
> Thanks
> Anamika
>
On 03/09/2015 9:29 AM, Anamika Chaudhuri wrote:
> Hi All:
>
> I am trying to use the dwish function in the MCMCpack in R
>
> dwish(W, v, S) where
>
> Arguments
> W-Positive definite matrix W
> v-Degrees of freedom (scalar).
> S-Inverse scale matrix
>
> How do I determine W, the positive definit
Dear Joyaa,
I too run R 3.2.2 on a Windows 10 system. I uninstalled R, deleted my package
library, and then reinstalled R and the Rcmdr and RcmdrPlugin.survival
packages. I took all defaults, except that I selected the SDI rather than the
default MDI for Rgui, but I seriously doubt that this is
Have a look at ?outer
outer(1:10, 10:1)
Best regards,
ir. Thierry Onkelinx
Instituut voor natuur- en bosonderzoek / Research Institute for Nature
and Forest
team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance
Kliniekstraat 25
1070 Anderlecht
Belgium
To call in the statistician
I have two vectors of probability distribution of the same length n for
random variable X and Y. I want to built matrix of two-dimension
distribution for X and Y with assumption of independence.
P(X=i,Y=j)=P(X=i)*P(Y=j)
I want to do this very fast for n=120 and big amount of different
distribution
I have two large data sets in SPSS which I am trying to merge the files using
R - (for test purpose I included only two variables with 4 cases) and below
is the R syntax that I am using for merging the files.
data <- read.spss("D:/R_merge/Data.sav")
data1 <- read.spss("D:/R_merge/Data1.sav")
mydat
Hi All:
I am trying to use the dwish function in the MCMCpack in R
dwish(W, v, S) where
Arguments
W-Positive definite matrix W
v-Degrees of freedom (scalar).
S-Inverse scale matrix
How do I determine W, the positive definite matrix. The matrix provided in
the documentation doesnot help.
Thanks
Hello r-help,
I am quite new to R. I downloaded R 3.2.2 for Windows to use with Windows 10.
On attempting to load the RcmdrPlugin.survival plug-in I got this error message:
Error in structure(.External(.C_dotTclObjv, objv), class = "tclObj") :
[tcl] invalid command name "configure".
The
1. Always reply to the list, not just to 1 person.
2. I don't do private consulting.
3. Read the posting guide linked below for how to properly post code.
Cheers,
Bert
Bert Gunter
"Data is not information. Information is not knowledge. And knowledge
is certainly not wisdom."
-- Clifford Sto
fabrizio renzi gmail.com> writes:
>
> I am using spdep package to do spatial estimations in R.
>
> Anyway I was not able to find out how to compute the loglikelihood (and a
> pseudo-R^2) of a 2sls spatial model, estimated through the command stsls. I
> need some fitting indicator to compare the
Hi
what is F?
F>2 & F<2
this is FALSE for all values of F
What value you want to extract? All rows corresponding to condition or just
values from specific column.
For selection values you can use e.g. [
data(iris)
sel<-iris$Sepal.Width>4
iris[sel,] or iris[sel, c(1,3,5)]
Cheers
Petr
From: Sh
Hi
p value of what? How do you know that it should be 0.3?
Your HTML post is mangled and almost unreadable.
Your code is not reproducible, we do not have AT1.csv
AT1 shall be numeric so your reading process is wrong and following conversion
to numeric shall be umnnecessary if you read your dat
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