Re: [R] Cannot subset a specific mean from this function

2015-12-18 Thread Bradley Wolf
David, I withdrew from the class because I couldn't understand it. Apologies. I shall ask no more questions. Brad On Fri, Dec 18, 2015 at 3:28 PM, David Winsemius wrote: > > > On Dec 18, 2015, at 7:23 AM, Bradley Wolf wrote: > > > > Jim, > > Thank you for your response. I am not asking you

[R] Help needed in data cleaning

2015-12-18 Thread Web Web
Hello, I need some help in data cleaning using R. my CSV file looks as follows. "id","gender","age","category1","category2","category3","category4","category5","category6","category7","category8","category9","category10"1,"Male",22,"movies","music","travel","cloths","grocery",2,"Mal

Re: [R] Missing data in RMark

2015-12-18 Thread Joe Ceradini
Caroline - the phidot forum is an *excellent* spot to post this question. There is an entire RMark subforum. www.phidot.org/forum/index.php Even just searching this forum will probably give you some answers. Also, this book has a whole section on individual covariates and approaches for dealing wi

Re: [R] error in vcovNW

2015-12-18 Thread Saba Sehrish via R-help
Thank you. The issue is resolved by scaling the data in millions. Saba On Saturday, 19 December 2015, 15:06, Achim Zeileis wrote: On Sat, 19 Dec 2015, Saba Sehrish via R-help wrote: > Hi I am using NeweyWest standard errors to correct lm( ) output. For example: > lm(A~A1+A2+A3+A4+A5+B1

Re: [R] error in vcovNW

2015-12-18 Thread Achim Zeileis
On Sat, 19 Dec 2015, Saba Sehrish via R-help wrote: Hi I am using NeweyWest standard errors to correct lm( ) output. For example: lm(A~A1+A2+A3+A4+A5+B1+B2+B3+B4+B5) vcovNW<-NeweyWest(lm(A~A1+A2+A3+A4+A5+B1+B2+B3+B4+B5)) I am using package(sandwich) for NeweyWest. Now when I run this command, i

[R] error in vcovNW

2015-12-18 Thread Saba Sehrish via R-help
Hi I am using NeweyWest standard errors to correct lm( ) output. For example: lm(A~A1+A2+A3+A4+A5+B1+B2+B3+B4+B5) vcovNW<-NeweyWest(lm(A~A1+A2+A3+A4+A5+B1+B2+B3+B4+B5)) I am using package(sandwich) for NeweyWest. Now when I run this command, it gives following error: Error in solve.default(diag(n

Re: [R] Would you please help me to create a table in R?

2015-12-18 Thread Jim Lemon
Hi Marna, Okay. I think I have a better idea now. I still don't quite get what "output" represents, but I think the "table" you want is something like what is produced by this code: birdlevels<-c("0","SiteA","SiteB","SiteC") raw.data<-data.frame(T2010=factor(rep("SiteA",11),levels=birdlevels), T2

Re: [R] Would you please help me to create a table in R?

2015-12-18 Thread S Ellison
> I want to get the table like "output". Any possibility to get it in R? What do the rows represent in 'output'? Places? Times? Individuals? What do the numbers in the table relate to? Individual bird identifier? Number of birds?

Re: [R] Cannot subset a specific mean from this function

2015-12-18 Thread David Winsemius
> On Dec 18, 2015, at 7:23 AM, Bradley Wolf wrote: > > Jim, > Thank you for your response. I am not asking you for you to do my work. > I am really new to programming (in any context) and really haven't gotten > the grasp of the logic yet. I have used R before but in the context of R > Command

Re: [R] introduce axis break lattice plot multipanel

2015-12-18 Thread David Winsemius
> On Dec 18, 2015, at 12:32 PM, Luigi Marongiu wrote: > > Dear all, > I am plotting some data using lattice's barchart. One of the counts I > am plotting has a very large value with respect to the other variables > and I would like to introduce a break in the axis to compensate for > this 'anoma

Re: [R] introduce axis break lattice plot multipanel

2015-12-18 Thread Bert Gunter
Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Fri, Dec 18, 2015 at 12:32 PM, Luigi Marongiu wrote: > Dear all, > I am plotting some data using lattice's barch

Re: [R] lattice strip.custom in plot for multiple groups

2015-12-18 Thread David Winsemius
> On Dec 18, 2015, at 12:22 PM, Luigi Marongiu wrote: > > Dear all, > I am plotting the count of some data subdivided in different groups. > the variables i am using are: > A = tests performed > B = positive/negative results (but in this case the results are all > positive, so all 1) > C = multi

[R] introduce axis break lattice plot multipanel

2015-12-18 Thread Luigi Marongiu
Dear all, I am plotting some data using lattice's barchart. One of the counts I am plotting has a very large value with respect to the other variables and I would like to introduce a break in the axis to compensate for this 'anomaly' and give more breath to the other bars. In this example the high

[R] lattice strip.custom in plot for multiple groups

2015-12-18 Thread Luigi Marongiu
Dear all, I am plotting the count of some data subdivided in different groups. the variables i am using are: A = tests performed B = positive/negative results (but in this case the results are all positive, so all 1) C = multiple (1) or single (0) test applied D = count of instances E = cases (1) o

Re: [R] multidimensional splines

2015-12-18 Thread Bert Gunter
1. I do not think what the OP requested exists, at least as I understand her -- how would one define the "surfaces" where the piecewise multidimensional polynomials are "joined"? (only 1-d space is ordered) 2. But, as she has already been told, there are various ways of doing multivariate smoothi

Re: [R] multidimensional splines

2015-12-18 Thread David Winsemius
> On Dec 18, 2015, at 7:42 AM, > wrote: > > Dear all, > > I am looking for a package which performs splining in more than one dimension > with polynomials of order>1, exactly as the package "splines" does in 1D. > For the moment I was only able to find the package "polspline", whose > funct

Re: [R] Gather columns based on multiple columns using tidyr

2015-12-18 Thread fahad.usman
Hi David, I did something similar: years <- scotland_weather%>% select(starts_with("Year"))%>% gather(year.col,year)%>% select(-year.col) months <- scotland_weather[seq(1, 24, 2)]%>% gather(month,rainfall_mm) sco

[R] Missing data in RMark

2015-12-18 Thread Caroline Glidden
I am currently trying to run a Known Fates Model in RMark with individual time varying covariates. However, for animals that died early in the study or were not captured at one capture period I, of course, do not have data for all of their time points. I thought that NAs would not matter when th

Re: [R] Would you please help me to create a table in R?

2015-12-18 Thread Marna Wagley
Dear Jim, I am sorry for not explaining the question in a clear way. I am trying to explain it, let's see how much clear I can make it. For the given example, (raw.data). Let's say, the 11 birds were marked and released at site A in a landscape (a combination of sites siteA, siteB, site C) in 2010

Re: [R] Converting from Continuous 2D Points to Continuous 2D Vectors

2015-12-18 Thread David L Carlson
Look at the CRAN Task View: "Handling and Analyzing Spatio-Temporal Data," particularly the section on "Moving objects, trajectories." The tools you need are probably already available. https://cran.r-project.org/web/views/SpatioTemporal.html - David L Carlso

Re: [R] multidimensional splines

2015-12-18 Thread William Dunlap via R-help
Have you considered thin plate splines, which are a natural extension of one-dimensional splines to higher dimensional spaces, but are not piecewise polynomials? The Tps function in the fields package will fit a thin plate spline to irregularly spaced data. Bill Dunlap TIBCO Software wdunlap tib

Re: [R] Cannot subset a specific mean from this function

2015-12-18 Thread Bradley Wolf
Jim, Thank you for your response. I am not asking you for you to do my work. I am really new to programming (in any context) and really haven't gotten the grasp of the logic yet. I have used R before but in the context of R Commander and am trying this so I can be a more robust user. That being

[R] multidimensional splines

2015-12-18 Thread francesca.mancini
Dear all, I am looking for a package which performs splining in more than one dimension with polynomials of order>1, exactly as the package "splines" does in 1D. For the moment I was only able to find the package "polspline", whose function "polymars" performs just piecewise linear splines, so n

Re: [R] Gather columns based on multiple columns using tidyr

2015-12-18 Thread fahad.usman
Dear Ista, Many thanks for your reply. Your tidyr solution didn’t work: > dput(head(scotland_weather,6)) structure(list(Jan = c(293.8, 292.2, 275.6, 252.3, 246.2, 245 ), Year.1 = c(1993L, 1928L, 2008L, 2015L, 1974L, 1975L), Feb = c

Re: [R] Numerical differentiation of a vector of values

2015-12-18 Thread William Dunlap via R-help
You can fit a spline to the points and evaluate the derivative of the fitted spline where you want. The built-in splines package has functions for this, as do other packages on CRAN. Bill Dunlap TIBCO Software wdunlap tibco.com On Fri, Dec 18, 2015 at 1:09 AM, BARLAS Marios 247554 wrote: > Hi

Re: [R] paneling spplot and hist

2015-12-18 Thread Jannes Münchow
Hi Pai, there are at least two solutions two your problem. The first solution makes use of R's base graphics instead of using the lattice-based spplot function: library("sp") library("RColorBrewers") library("classInt") # example more or less copied from the Applied Spatial Data Analysis w

Re: [R] Numerical differentiation of a vector of values

2015-12-18 Thread Jeff Newmiller
Did you really fail to type "R numeric derivative" into Google, or did you do it and then not notice the built in numericDeriv function or the contributed numderiv package? -- Sent from my phone. Please excuse my brevity. On December 18, 2015 1:09:06 AM PST, BARLAS Marios 247554 wrote: >Hi e

Re: [R] Changing X axis values

2015-12-18 Thread Amelia Marsh
Dear Sir Thanks a lot for your great help. I had tried the argument by = 1000, but wasn't aware of "seq". Thanks again. With regards Amelia On Friday, 18 December 2015 5:00 PM, Jim Lemon wrote: Hi Amelia,The usual way is: plot(...,xaxt="n")axis(1,at=seq(0,18000,by=1000) However, you wil

Re: [R] Numerical differentiation of a vector of values

2015-12-18 Thread PIKAL Petr
Hi I may be completely wrong, but did you consider ?diff Cheers Petr > -Original Message- > From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of BARLAS > Marios 247554 > Sent: Friday, December 18, 2015 10:09 AM > To: r-help@r-project.org > Subject: [R] Numerical differentiati

Re: [R] Changing X axis values

2015-12-18 Thread Michael Dewey
Dear Amelia As well as Jim's excellent advice you may want to look at the las parameter which enables you to alter the orientation. Of course you then have to lie on your side to read them or turn your monitor through pi/2 On 18/12/2015 11:30, Jim Lemon wrote: Hi Amelia, The usual way is:

Re: [R] Changing X axis values

2015-12-18 Thread Jim Lemon
Hi Amelia, The usual way is: plot(...,xaxt="n") axis(1,at=seq(0,18000,by=1000) However, you will get overlapping labels unless you use a small font or a large graphics device. You may want to look at the staxlab function in the plotrix package. Jim On Fri, Dec 18, 2015 at 10:20 PM, Amelia Mars

[R] Changing X axis values

2015-12-18 Thread Amelia Marsh via R-help
Dear Forum, Assuming I need to plot a graph. In the code I have defined X axis range as xlim=c(0,18000) In the plot, the values visible w.r.t X axis are 0, 5000, 1, 18000. To improve the graph clarity, is there any way I can show the values of X axis as 0, 1000, 2000, 3000, 4000, 5000

Re: [R] How to use the options "usecommand" and "command" of tktable?

2015-12-18 Thread Cleber Borges
# only a update the R code (with strange behavior) library( tcltk ); tclRequire( "Tktable" ) top <- tktoplevel() tcl('variable', 'myarray') tcl('array', 'unset', 'myarray') x <- 0 tabCmd <- function() { x <<- x + 1 return( as.tclObj( paste(x) ) ) } tab <- tkwidget( top, 'table', rows=2, co

[R] qqPlot vs qqcomp

2015-12-18 Thread mohsen hs via R-help
Hello all I am using the following two commands and get two completely different qq plots while meanlog and sdlog are almost the same. Any help is highly appreciated.  dev.new() ; qqPlot(serving, dist = "lnorm", estimate.params = TRUE, add.line = TRUE) fitln <- fitdist(serving, "lnorm") dev.new(

[R] Numerical differentiation of a vector of values

2015-12-18 Thread BARLAS Marios 247554
Hi everyone, I have sets of experimental values representing I-V curves. I want to get the derivative of such numerical data but in r there doesn' seem to be a premade function. I can write something of my own, but I was wondering if there is a standard package out there? Thanks in advance! _