Re: [R] efetch result not in character format

> On Jun 9, 2017, at 10:45 AM, Ezra Bekele wrote: > > Hi, > > I want to use reutils to obtain the accession numbers of a query search in > character format. When I use efetch, the accession number isn't in a > character format, and I'm not sure if the number is accurate, because I get > the err

Re: [R] Exercise in R

We don't do homework here. Ask your professor for help. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Fri, Jun 9, 2017 at 9:10 AM, Alex Ferrara

[R] efetch result not in character format

Hi, I want to use reutils to obtain the accession numbers of a query search in character format. When I use efetch, the accession number isn't in a character format, and I'm not sure if the number is accurate, because I get the error: Error in file.exists(destfile) : object 'destfile' not found

[R] Exercise in R

Hi i need some help with this exercise: FIles: https://mega.nz/#!JxMFGIwC!qA85SBIBRVagCzYfmLwSvGuNK_qXqCXrakPxXryCpGg #PARZIAL 3: GEO #Data: # Shapefile "INCOME" contains dummy information about revenue # Common Abbreviations in the "INCOME" variable and the centroid altitude #dell common in the

Re: [R] Paths in knitr

I'd say it is an expert-only option. If you do not understand what it means, I strongly recommend you not to set it. Similarly, you set the root_dir option and I don't know why you did it, but it is a typo anyway (should be root.dir). Regards, Yihui -- https://yihui.name On Fri, Jun 9, 2017 at 4

Re: [R] Dendogram from RNAseq read count to show correlation between biological replicate using R

Yogesh please try to search in google or stackoverfolow or for that matter Biostars. These are pretty simple linear programming tools specially needing just required package and function once you parse the matrix or in your case .csv file. If you find particular problem when your code runs an error

Re: [R] Dendogram from RNAseq read count to show correlation between biological replicate using R

We don't do your work for you. Read the posting guide (below) to find what we will do. If you are unwilling or unable to do your work yourself -- including learning R-- you should consider finding someone else who will. -- Cheers, Bert Bert Gunter "The trouble with having an open mind is that peo

[R] Dendogram from RNAseq read count to show correlation between biological replicate using R

Dear all, I need to make dendogram from read count in a csv file across 34 samples including biological replicate. Please share R code or package to do this. Do I also need to normalized read count before using read data? Thanks [[alternative HTML version deleted]] ___