[R] How does Markov random field (bs=mrf) in mgvc gam handle repeated measures on the spatial units?

2018-08-23 Thread Susan Elias
Hello R, I am attempting a spatio-temporal model in mgcv gam. I am using a factor smooth to define each of 27 areal units in a shapefile ("id") as subjects (essentially) which have undergone 23 repeated measurements in time ("year"). I am using the Markov random field to define the neighbor rela

Re: [R] How to add a geom_smooth() line

2018-08-23 Thread Riley Finn
Jeff, You need to reshape your data frame. If you use ggplot, you will often have to present your data in "long format" Use the reshape2 package. I made a sample data frame because you didn't provide one. I also change your x and y labels because they made no sense. data <- data.frame( time

Re: [R] How to add a geom_smooth() line

2018-08-23 Thread Rui Barradas
Hello, if you want to fit different models to each of deliveries and launches, use the wide format instead: ggplot(data = data, aes(x = timeline)) + geom_point(aes(y = deliveries), color = "blue") + geom_smooth(aes(y = deliveries), color = "blue", method = lm, formula = y ~ log(x)) +

Re: [R] How to add a geom_smooth() line

2018-08-23 Thread Rui Barradas
Sorry, should be geom_smooth, not stat_smooth. They both work the same way or very close to it. Rui Barradas On 24/08/2018 05:08, Rui Barradas wrote: Hello, The trick is to reshape your data from wide to long format. There are many ways to do this, I will use package reshape2. Make up a data

Re: [R] How to add a geom_smooth() line

2018-08-23 Thread Rui Barradas
Hello, The trick is to reshape your data from wide to long format. There are many ways to do this, I will use package reshape2. Make up a dataset: library(ggplot2) library(reshape2) set.seed(9773) n <- 20 data <- data.frame(timeline = 1:n, deliveries = log(1:n) + runif(n),

[R] How to add a geom_smooth() line

2018-08-23 Thread Jeff Reichman
R-help I want to add two smooth lines (geom_smooth()) for each scatter plot. How do I do that? ggplot() + geom_point(data=data, aes(x=timeline, y=deliveries), color="blue") + geom_point(data=data, aes(x=timeline, y=launches), color="red") + xlab("Deliveries") + ylab("Launches")

Re: [R] R shared library (/usr/lib64/R/lib/libR.so) not found.

2018-08-23 Thread Peter Langfelder
On Thu, Aug 23, 2018 at 7:33 AM Berwin A Turlach wrote: > > G'day Rolf, > > On Thu, 23 Aug 2018 23:34:38 +1200 > Rolf Turner wrote: > > > I guess I should have said --- I did > > > > sudo make prefix=/usr install > > > > which puts stuff into /usr rather than into /usr/local. > > ??? > > I d

Re: [R] Plots in ioslides and R markdown

2018-08-23 Thread Jeff Newmiller
This is not reproducible because you have not provided the plot code or sample data. Output of sessionInfo would probably be appropriate as well. As to whether needing to load objects is typical... yes, rmarkdown runs from a fresh environment to emphasize reproducibility, but your load command i

Re: [R] R shared library (/usr/lib64/R/lib/libR.so) not found.

2018-08-23 Thread Berwin A Turlach
G'day Rolf, On Thu, 23 Aug 2018 23:34:38 +1200 Rolf Turner wrote: > I guess I should have said --- I did > > sudo make prefix=/usr install > > which puts stuff into /usr rather than into /usr/local. ??? I do not remember ever specifying "prefix=foo" at the make install stage. Not for a

Re: [R] Unclear about the output from summary of ca.jo from package urca

2018-08-23 Thread Bert Gunter
This is about statistics , not R programming, and so is off topic here. Your first port of call for this sort of thing should be the package docs, **including any references** . There are references given. Have you studied them?? Cheers, Bert Gunter "The trouble with having an open mind is that

Re: [R] R shared library (/usr/lib64/R/lib/libR.so) not found.

2018-08-23 Thread Berwin A Turlach
G'day Rolf, On Thu, 23 Aug 2018 22:57:35 +1200 Rolf Turner wrote: > I *think* that this is an R question (and *not* an RStudio question!) Others may disagree... :) > I have, somewhat against my better judgement, decided to experiment > with using RStudio. Very good if you are still involved w

Re: [R] R shared library (/usr/lib64/R/lib/libR.so) not found.

2018-08-23 Thread Rolf Turner
On 08/23/2018 11:09 PM, Jan T Kim via R-help wrote: Hi Rolf & All, I haven't built R in a while, but my general expectation of an autotools based build & install would be that the default prefix is /usr/local, rather than /usr. So I'd expect the shared libs in /usr/local/lib, /usr/local/lib64

Re: [R] R shared library (/usr/lib64/R/lib/libR.so) not found.

2018-08-23 Thread Jan T Kim via R-help
Hi Rolf & All, I haven't built R in a while, but my general expectation of an autotools based build & install would be that the default prefix is /usr/local, rather than /usr. So I'd expect the shared libs in /usr/local/lib, /usr/local/lib64 etc. I also have a recollection that I once installed R

[R] R shared library (/usr/lib64/R/lib/libR.so) not found.

2018-08-23 Thread Rolf Turner
I *think* that this is an R question (and *not* an RStudio question!) I have, somewhat against my better judgement, decided to experiment with using RStudio. I downloaded and install RStudio. Easy-peasy. Nice lucid instructions. Then I tried to start RStudio ("rstudio" from the command li

[R] Plots in ioslides and R markdown

2018-08-23 Thread Patrick Connolly
I'm having difficulty getting plots into ioslides. It seems to me that the scale is completely out, but I can't figure out what to do about it. Whatever I try, I get the title slide, then a second with a horizontal line and a vertical line in the bottom right corner. It looks like a badly scaled

[R] Unclear about the output from summary of ca.jo from package urca

2018-08-23 Thread Ashim Kapoor
Dear All, I am not sure about the summary of the function ca.jo. I have posted my query here :- https://stats.stackexchange.com/questions/363188/interpreting-the-names-used-in-the-output-of-johansen-test-in-package-urca-in-r I did not receive any reply so I am posting my query here. Many thanks

Re: [R] importing .v8x file in R

2018-08-23 Thread Rolf Turner
On 08/23/2018 08:35 PM, Rui Barradas wrote: Hello, Sorry but I don't believe this is a question for r-help. r-help is meant for questions about R code, you should find out what type of file do you have. Maybe open it and see its contents. There is really nothing we can do. Indeed. But the

Re: [R] importing .v8x file in R

2018-08-23 Thread Rui Barradas
Hello, Sorry but I don't believe this is a question for r-help. r-help is meant for questions about R code, you should find out what type of file do you have. Maybe open it and see its contents. There is really nothing we can do. Rui Barradas On 23/08/2018 07:35, Vidya Alagiriswamy wrote:

Re: [R] differing behavior of mean(), median() and sd() with na.rm

2018-08-23 Thread Rolf Turner
On 08/23/2018 06:15 PM, Ivan Calandra wrote: Thanks all for the enlightenment. So, it does make sense that mean() produces NaN and median()/sd() NA, from a calculation point of view at least. But I still think it also makes sense that the mean of NA is NA as well, be it only for consistency

[R] importing .v8x file in R

2018-08-23 Thread Vidya Alagiriswamy
HI, I am new to R and want to read the data file with extension .v8x. The file is hints2003.d2006_06_02.public.v8x. Is anyone familiar with this extension? Please help. Thanks, Vidya [[alternative HTML version deleted]] __ R-help@r-project