Re: [R] how to import/read .vcf files in R

2020-01-28 Thread Ana Marija
Thanks for the tip! On Tue, Jan 28, 2020 at 11:36 AM Bert Gunter wrote: > > As this apparently involves genomic data, I would suggest that you ask this > on the BioConductor site: > https://www.bioconductor.org/help/ > especially if you don't get effective help here. > > Bert Gunter > > > > > On

Re: [R] how to import/read .vcf files in R

2020-01-28 Thread Bert Gunter
As this apparently involves genomic data, I would suggest that you ask this on the BioConductor site: https://www.bioconductor.org/help/ especially if you don't get effective help here. Bert Gunter On Tue, Jan 28, 2020 at 9:29 AM Ana Marija wrote: > Hello, > > I tried doing: > > library(vcfR

[R] how to import/read .vcf files in R

2020-01-28 Thread Ana Marija
Hello, I tried doing: > library(vcfR) > vcf <- > read.vcfR("ALL.chr1.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf", > verbose = FALSE ) but this takes forever to load and I am not sure it is even working. Any other suggestion on how I can read in .vcf file in R? Thanks Ana _

Re: [R] problems with greek language on windows

2020-01-28 Thread Ioannis Dimakos
You could try > Sys.setlocale("LC_CTYPE", "Greek") and it should work. Best, Ioannis On Tue, Jan 28, 2020 at 5:59 PM Pierre Ratinaud < pierre.ratin...@univ-tlse2.fr> wrote: > Hello, > > I've seen two computers in Greece which have the following problem. They > are both windows 10 computers wit

[R] problems with greek language on windows

2020-01-28 Thread Pierre Ratinaud
Hello, I've seen two computers in Greece which have the following problem. They are both windows 10 computers with R 3.6.2. These both windows are asked to use english or french as main language. In this context, if users switch their keyboard to write greek, they cannot use greek input in the

Re: [R] [FORGED] Re: Executing an R script and show the plots.

2020-01-28 Thread Felix Blind
Thanks Abby, I am using Linux and device X11 worked for me in the past. I will check your script later and tell you if it works. On 1/28/20 1:27 AM, Abby Spurdle wrote: > Here's a solution for Windows, for use with graphics::plot. > Using, Linux and grid or ggplot2, may require some modification.