Re: [R] how to show percentage of individuals for two groups on histogram?

2020-05-21 Thread Eric Berger
Hi Ana, This is a very common question about ggplot. A quick search turns up lots of hits that answer your question. Here are a couple https://community.rstudio.com/t/trouble-scaling-y-axis-to-percentages-from-counts/42999 https://stackoverflow.com/questions/3695497/show-instead-of-counts-in-charts

Re: [R] how to show percentage of individuals for two groups on histogram?

2020-05-21 Thread Jim Lemon
Hi Ana, Just noticed a typo from a hasty cut-paste. Two lines should read: casehist<-table(cut(aafd$HBAIC[aafd$pheno=="case"],breaks=0:15)) controlhist<-table(cut(aafd$HBAIC[aafd$pheno=="control"],breaks=0:15)) Jim On Fri, May 22, 2020 at 2:08 PM Jim Lemon wrote: > > Hi Ana, > My apologies for

Re: [R] how to show percentage of individuals for two groups on histogram?

2020-05-21 Thread Jim Lemon
Hi Ana, My apologies for the pedestrian graphics, but it may help. # a bit of fake data aafd<-data.frame(FID=paste0("fam",1000:2739), IID=paste0("G",1000,2739),FLASER=rep(1,1740), PLASER=c(rep(1,892),rep(2,848)), DIABDUR=sample(10:50,1740,TRUE), HBAIC=rnorm(1740,mean=7.45,sd=2),ESRD=rep(1,1740

Re: [R] R hangs when attempting open existing *.R file

2020-05-21 Thread Jeff Newmiller
R does not exactly "open R files" the way you phrased it... on most platforms you use a text editor for that. R App is a bit of a special case... ergo, you should probably be asking on the specialized list. On May 21, 2020 3:47:18 PM PDT, John Helly wrote: >MacOSX R App.  Am I missing something

Re: [R] R hangs when attempting open existing *.R file

2020-05-21 Thread John Helly via R-help
Ok. Thanks. I will do that.  Sorry for the confusion. J. On 5/21/20 15:53, Jeff Newmiller wrote: > R does not exactly "open R files" the way you phrased it... on most platforms > you use a text editor for that. R App is a bit of a special case... ergo, you > should probably be asking on the spec

Re: [R] how to show percentage of individuals for two groups on histogram?

2020-05-21 Thread Ana Marija
the result would basically look something like this on in attach or the overlay of those two plots On Thu, May 21, 2020 at 5:23 PM Ana Marija wrote: > > Hello, > > I have a data frame like this: > > head(a) > FID IID FLASER PLASER DIABDUR HBA1C ESRD pheno > 1 fam1000-03 G1000 1

Re: [R] R hangs when attempting open existing *.R file

2020-05-21 Thread John Helly via R-help
MacOSX R App.  Am I missing something about using that GUI? J. On 5/21/20 15:43, Jeff Newmiller wrote: > What do you mean by "open an existing R file"... did you try to load it with > the source function or the MacOSX R App? If the latter you may be better off > reading the archives of and/or a

Re: [R] R hangs when attempting open existing *.R file

2020-05-21 Thread Jeff Newmiller
What do you mean by "open an existing R file"... did you try to load it with the source function or the MacOSX R App? If the latter you may be better off reading the archives of and/or asking in R-sig-mac... On May 21, 2020 3:35:13 PM PDT, John Helly via R-help wrote: >Aloha. > >Just installed

[R] R hangs when attempting open existing *.R file

2020-05-21 Thread John Helly via R-help
Aloha. Just installed 'Arbor day' and what was an occasional problem is now preventing me from loading even a script I was routinely running the day before. Anyone have any idea what might be wrong now?  I just get a beachball and Force Quit tells me R is not responding. Thank you. J. -- John

[R] how to show percentage of individuals for two groups on histogram?

2020-05-21 Thread Ana Marija
Hello, I have a data frame like this: > head(a) FID IID FLASER PLASER DIABDUR HBA1C ESRD pheno 1 fam1000-03 G1000 1 1 38 10.21 control 2 fam1001-03 G1001 1 1 15 7.31 control 3 fam1003-03 G1003 1 2 17 7.01case 4 fam1005-

Re: [R] Help with Parallel Processing

2020-05-21 Thread Jeff Newmiller
More specifically, read the vignettes. Actually, always start with the package vignettes if any are available. On May 21, 2020 1:51:48 PM PDT, Ista Zahn wrote: >Hi Ravi, > >Please read the ?future documentation, the answers to all your >questions are explained there. > >Best, >Ista > >On Thu, Ma

Re: [R] how to factor in the ID of the imported subtable to R table?

2020-05-21 Thread David Winsemius
On 5/21/20 9:24 AM, YANJUN CHEN via R-help wrote: Dear R community, I am new to R—did some online tutorials and exercises in R playground. I was wondering if I could seek guidance on the following matter. I have a set of 403 .csv files. Each.csv file contains the same layouts and distinguis

Re: [R] Help with Parallel Processing

2020-05-21 Thread Ista Zahn
Hi Ravi, Please read the ?future documentation, the answers to all your questions are explained there. Best, Ista On Thu, May 21, 2020 at 3:20 PM Ravi Jeyaraman wrote: > > Dear Friends, > > > > I'm trying to run a bunch of tasks in parallel using 'Future' package and > for some reason, it's not

Re: [R] Problem with checks on R/4.0.0

2020-05-21 Thread Jeff Newmiller
Do read the Posting Guide... you are on the wrong mailing list for this question. On May 20, 2020 6:46:01 PM PDT, Simon Michnowicz via R-help wrote: >Dear R Group, >I can build a simple R/4.0.0 OK using gcc/8.1.0, but when I tried to >link >it with the Intel MKL, 'make check' produced this

[R] how to factor in the ID of the imported subtable to R table?

2020-05-21 Thread YANJUN CHEN via R-help
Dear R community, I am new to R—did some online tutorials and exercises in R playground. I was wondering if I could seek guidance on the following matter. I have a set of 403 .csv files. Each.csv file contains the same layouts and distinguished by subject ID and date in the file name. The datas

[R] Problem with checks on R/4.0.0

2020-05-21 Thread Simon Michnowicz via R-help
Dear R Group, I can build a simple R/4.0.0 OK using gcc/8.1.0, but when I tried to link it with the Intel MKL, 'make check' produced this error tail tests/reg-tests-1d.Rout.fail > (m <- cbind(0, c(NA, 0), 0:-1)) [,1] [,2] [,3] [1,]0 NA0 [2,]00 -1 > nTypes <- eval(form

[R] Help with Parallel Processing

2020-05-21 Thread Ravi Jeyaraman
Dear Friends, I'm trying to run a bunch of tasks in parallel using 'Future' package and for some reason, it's not able to find the data frames that I want it to find. I've created the below sample program to show what I'm doing. Should I be exporting the Global data to each child process? I

Re: [R] Attribute Combinations

2020-05-21 Thread Ista Zahn
Another one just for fun: prop.table(table(interaction(x))) or possibly prop.table(table(droplevels(interaction(x Best, Ista On Thu, May 21, 2020 at 1:22 PM Jeff Reichman wrote: > > R-help forum > > > > Looking for a function or some guidance for obtaining the percentage of > attribute c

Re: [R] Attribute Combinations

2020-05-21 Thread John Kane
One possible way library(tidyr) dat1 <- structure(list(V1 = c("A", "A", "A", "A", "A", "A", "A", "A", "A", "A"), V2 = c("A", "B", "A", "A", "A", "B", "C", "C", "B", "C"), V3 = c("B", "C", "D", "B", "B", "C", "B", "B", "C", "C" )), class = "data.frame", row.names = c(NA, -10L)) dat2 <- unite(d

Re: [R] [EXTERNAL] Attribute Combinations

2020-05-21 Thread Dalthorp, Daniel via R-help
# assuming your data frame is named "x", you can get the counts of each combo: table(do.call(paste0, x)) # and to get the proportions: table(do.call(paste0, x))/nrow(x) -Original Message- From: R-help On Behalf Of Jeff Reichman Sent: Thursday, May 21, 2020 10:22 AM To: R-help@r-proje

[R] Attribute Combinations

2020-05-21 Thread Jeff Reichman
R-help forum Looking for a function or some guidance for obtaining the percentage of attribute combinations, for example V1 V2 V3 A A B A B C A A D A A B A

[R] [R-pkgs] statespacer: State Space Modelling in 'R'

2020-05-21 Thread Dylan Beijers
Dear All, The statespacer package is now on CRAN ( https://cran.r-project.org/package=statespacer). This package provides functionality for modelling and forecasting time series using state space techniques. For more info, please see https://dylanb95.github.io/statespacer/ Best, Dylan Beijers

Re: [R] survival anaylsis with tabulated data

2020-05-21 Thread John Kane
http://adv-r.had.co.nz/Reproducibility.html http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example On Thu, 21 May 2020 at 09:16, PIKAL Petr wrote: > Hallo > > I am not private consultant so please keep your messages on help list. > > From help page I understand

Re: [R] survival anaylsis with tabulated data

2020-05-21 Thread PIKAL Petr
Hallo I am not private consultant so please keep your messages on help list. >From help page I understand that the function survtab_ag needs to have >**specially prepared** data as input. We could only guess if your data are in >correct format and most probably they are not. Without knowing de

Re: [R] survival anaylsis with tabulated data

2020-05-21 Thread PIKAL Petr
Hi I am not an expert and cannot give you canned solution, but here are few comments: Without knowing data structure it is hard to decipher where is the problem. So posting result of str(yourata) or at least part of it hardly anybody could help. Cuntry is typo? The error could by result of typo