[working version]
On 9/25/2021 2:55 AM, Leonard Mada wrote:
Dear List Members,
Is there a way to extract if an installed package is from Bioconductor
or if it is a regular Cran package?
The information seems to be *not* available in:
installed.packages()
### [updated]
# Basic Info:
inf
Dear Bert,
Indeed, this seems to work:
installed.packages(fields="Repository")
I still need to figure out what variants to expect.
Sincerely,
Leonard
On 9/25/2021 3:31 AM, Leonard Mada wrote:
Dear Bert,
The DESCRIPTION file contains additional useful information, e.g.:
1.) Package E
Dear Bert,
The DESCRIPTION file contains additional useful information, e.g.:
1.) Package EBImage:
biocViews: Visualization
Packaged: 2021-05-19 23:53:29 UTC; biocbuild
2.) deSolve
Repository: CRAN
I have verified a few of the CRAN packages, and they seem to include the
tag:
Repository:
Oh, I should have added that packages can be on other repositories
(local, github,...) and I think can be both in CRAN and BIOC . So your
query would not seem to have a clear answer. AFAICS anyway.
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking thi
The help file tells you that installed.packages() looks at the
DESCRIPTION files of packages.
Section 1.1.1 of "Writing R Extensions" tells you what information is
in such files.
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- O
Dear List Members,
Is there a way to extract if an installed package is from Bioconductor
or if it is a regular Cran package?
The information seems to be *not* available in:
installed.packages()
Sincerely,
Leonard
===
I started to write some utility functions to analyse installed
If you correct my typo as my followup message indicated, match() works
fine. As does logical indexing with %in%. The != version will work for
your query, but does not generalize to deleting several columns. The
point is to heed Jeff N's advice.
Bert Gunter
"The trouble with having an open mind i
Ah. Thanks Duncan. That makes sense based on some other messages I caught a
glimpse of as we tried some things. I will investigate down this line.
> On Sep 24, 2021, at 3:26 PM, Duncan Murdoch wrote:
>
> It is worth checking that the library where things were most recently
> installed is the
Thank you!
```
new_out <- new[ , "ID" != names( new ) ]
new[names(new) != "ID"]
```
worked as wanted, `new[-match("ID"), names(new)]` gave the error:
`Error in match("ID") : argument "table" is missing, with no default`.
Cheers
On Fri, Sep 24, 2021 at 7:33 PM Rui Barradas wrote:
>
> Hello,
>
> Li
It is worth checking that the library where things were most recently
installed is the first place R looks, i.e. the first entry in
.libPaths(). Often R is installed by an administrator, and users can't
write to the main library, so when they install packages they go
somewhere else. If "somew
I did try installing xml2 and it appeared to complete. I will ask him to try
again and send me the output.
> On Sep 24, 2021, at 1:58 PM, Jeff Newmiller wrote:
>
> Seems like they should install the xml2 package before proceeding to load
> whatever (tidyverse).
>
> This kind of "dependency m
Seems like they should install the xml2 package before proceeding to load
whatever (tidyverse).
This kind of "dependency missing" problem tends to be a recurring problem
particularly on Windows but in general when some deeply-embedded dependency
fails to load or is removed in preparation for up
Below is some output from one of my students. I have never seen this error and
tried a few things (updating packages for one) but am at a loss to help
further. Would appreciate suggestions that I can pass along.
Here is the error. I tried an install.packages(“xml2”) which appeared to
complete b
Hello,
Like this?
mtcars[names(mtcars) != "mpg"]
Hope this helps,
Rui Barradas
Às 15:09 de 24/09/21, Luigi Marongiu escreveu:
Hello,
this is a very simple question but...
what is the vector alternative to `subset(dataframe, select = - column)`?
I tried with:
```
x = new[-ID]
Error in `[.
typo. Correction:
x <- new[-match("ID", names(new))]
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
On Fri, Sep 24, 2021 at 7:31 AM Bert Gunter wrote:
>
> x <- n
The subset function
subset( new, select = -ID )
uses non-standard evaluation... it "knows" that when you write the language
symbol ID it may match to one of the column names in new, and the `-` in the
select argument will be noticed before R tries to change the sign of a variable
ID in your ca
x <- new[-match("ID"), names(new))]
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
On Fri, Sep 24, 2021 at 7:10 AM Luigi Marongiu wrote:
>
> Hello,
> this is a ve
Hello,
this is a very simple question but...
what is the vector alternative to `subset(dataframe, select = - column)`?
I tried with:
```
> x = new[-ID]
Error in `[.data.frame`(new, -ID) : object 'ID' not found
> x = new[-"ID"]
Error in -"ID" : invalid argument to unary operator
> x = new[[-"ID"]]
E
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