Re: [R] How to plot a legend centered only on the x axis

2017-05-12 Thread Antonio Silva
Thanks a lot Duncan, Jim and Marc! 2017-05-11 22:59 GMT-03:00 Marc Schwartz : > > Bingo. > > The 'inset' argument is what I was missing. That allows this to be done > with one step, rather than the two that I had. > > Thanks Duncan. > > Mar [[alternative HTML version deleted]] _

Re: [R] How to plot a legend centered only on the x axis

2017-05-11 Thread Antonio Silva
Thanks for you attention Mark. Your approach is really very interesting. I will try to apply it in my code. All the best Antonio 2017-05-11 16:19 GMT-03:00 Marc Schwartz : > > > On May 11, 2017, at 1:36 PM, Antonio Silva > wrote: > > > > Hello r-users > > &g

[R] How to plot a legend centered only on the x axis

2017-05-11 Thread Antonio Silva
Hello r-users I want to plot some barplots inside a looping with the legend placed outside the plotting area. No matter the number of bars I want the legend to be placed centered on the x-axis. See the example below for(i in 1:10) { var_1 <- sample(1000:10,sample(3:8,1)) ymax <- max(var_1)

Re: [R] setting the values of a secondary "y" axis

2017-05-06 Thread Antonio Silva
*3.5)) > > > Bill Dunlap > TIBCO Software > wdunlap tibco.com > > On Sat, May 6, 2017 at 2:50 PM, Antonio Silva > wrote: > >> Hello >> >> I want to make a plot with two "y" axes. The labels at axis 4 should be >> the >> values fro

[R] setting the values of a secondary "y" axis

2017-05-06 Thread Antonio Silva
Hello I want to make a plot with two "y" axes. The labels at axis 4 should be the values from axis 2 multiplied by a scale factor (as 3.5). In the example below I draw axis 4 exactly as axis 2. But I could not find a way to multiply its values by 3.5 (e.g.). plot(rnorm(100,30,5)) axis(4) # I'd l

Re: [R] circular regression question

2015-10-24 Thread Antonio Silva
Reading the help page with attention I saw that this function fits a regression model for "circular dependent and linear independent". So my question now is, is there a way to fit a model been with the circular as the dependent variable? Thanks Antonio 2015-10-24 20:19 GMT-02:

[R] circular regression question

2015-10-24 Thread Antonio Silva
Dear R users I'm trying to reproduce the results from Lowry et al. 2007 Lunar landings - Relationship between lunar phase and catch rates for an Australian gamefish-tournament fisheryFisheries Research 88: 15–23 Basically we have two columns: Lunar days and CPUE (catch per unit effort). The aim

Re: [R] a question on write.table

2015-09-28 Thread Antonio Silva
Thanks Giorgio, David and Rui With the suggestions my problem was solved in different ways. Best regards Antonio 2015-09-28 15:52 GMT-03:00 Giorgio Garziano : > Try this: > > X<-c("A","B","C","D","E") > Y<-c(0,1,2,3,4) > > for (i in 0:3) { > Y<-Y+i > data<-data.frame(X,Y) > fe.flag <- f

[R] a question on write.table

2015-09-28 Thread Antonio Silva
Dear R users I want to write a file that contains several data frames generated in a loop ing. I also want the column names be written to file only when it is created in first loop. In the example below, when I run each line separately without "for (i in ...) { }" it works, but when I run the lo

[R] Fwd: gdal_translate and gdalwarp question

2015-09-21 Thread Antonio Silva
Hello, I have some doubts on the usage of some gdal tools. After converting a hdf file to tif I want to reproject to SIRGAS2000 and clip between lats of 22 to 29 S and lats of 40 to 50 W. HDF file can be downloaded at https://app.box.com/s/16cf7qv6af6gsz1v66staori2mtneu0r Basically I'm followin

Re: [R] species names on a RDA plot

2015-04-05 Thread Antonio Silva
nice week, best regards Antonio Olinto 2015-04-04 22:22 GMT-03:00 Jim Lemon : > Hi Antonio, > Is it possible to use "add=TRUE" and display the plot in two passes? > > Jim > > > On Sat, Apr 4, 2015 at 11:44 PM, Antonio Silva > wrote: > >> Hello everybod

Re: [R] species names on a RDA plot

2015-04-04 Thread Antonio Silva
Hello everybody The problem is that species names are shown in the ordination diagram when the data set has a maximum of 80 rows, and mine has 81 (!!!). So now the question is: it is possible to go through this limitation? Thanks again, Antônio Olinto 2015-04-03 20:08 GMT-03:00 Antonio Silva

[R] species names on a RDA plot

2015-04-03 Thread Antonio Silva
Dear R users I'm trying to do a RDA analysis based on Borcard et al. 2011 Numerical Ecology with R examples. What I cannot understand is why when I run the script (RDA.R) using the dataset from book (dataset1.rar) RDA triplot shows species names and when I use my dataset (dataset2.rar) species na

Re: [R] ordering a boxplot

2015-03-22 Thread Antonio Silva
our approach: > > try: > > > > boxplot(mydata[,names(sort(apply(mydata,2,median)))]) > > > > B. > > > > > > On Mar 21, 2015, at 6:49 PM, Antonio Silva > wrote: > > > >> Thanks Bill and David > >> > >> Here goes

Re: [R] ordering a boxplot

2015-03-21 Thread Antonio Silva
factor levels according to a function of the data in each group. E.g., > compare the following two plots: > >d <- data.frame(Response=cos(1:15), Group=rep(c("A","B","C"),c(6,5,4))) >par(mfrow=c(1,2)) >boxplot(Response ~ Group, data=d) >b

[R] ordering a boxplot

2015-03-20 Thread Antonio Silva
Hello I'm using a dataframe (mydata) where row names are sampling points and column names are species in a multivariate analysis. If I write boxplot(mydata) I'll have boxplots for each species abundance in alphabetical order. How to get the boxes orderer by the median? Usually for this I write

Re: [R] using png and identify commands

2015-02-02 Thread Antonio Silva
Thanks Henrik and Tom, job done. Nice solutions. All the best Antonio Olinto 2015-02-02 17:31 GMT-02:00 Henrik Bengtsson : > On Mon, Feb 2, 2015 at 9:56 AM, Antonio Silva > wrote: > > Hi R users > > > > I want to save a plot after using the command identify. > &g

[R] using png and identify commands

2015-02-02 Thread Antonio Silva
Hi R users I want to save a plot after using the command identify. I use identify to place labels manually near the points in order to avoid overlapping lines and numbers. x<-c(1,2,3,4,5,6) y<-c(20,30,15,7,25,40) plot(x,y,type="b",ylim=c(0,45)) identify(x,y,labels=y) But when I add png(filenam

Re: [R] On p-values presented in the summary of Linear Models

2013-02-07 Thread Antonio Silva
OK, I found the answer: 2*pt(t,summary(fit1)$df[2]) Thanks anyway ... 2013/2/7 Antonio Silva > Dear list members > > I have a doubt on how p-values for t-statistics are calculated in the > summary of Linear Models. > > Here goes an example: > > x <- rnorm(100,

[R] On p-values presented in the summary of Linear Models

2013-02-07 Thread Antonio Silva
Dear list members I have a doubt on how p-values for t-statistics are calculated in the summary of Linear Models. Here goes an example: x <- rnorm(100,50,10) y <- rnorm(100,0,5) fit1<-lm(y~x) summary(fit1) summary(fit1)$coef[2] # b summary(fit1)$coef[4] # Std. Error summary(fit1)$coef[6] # t-sta

Re: [R] partial analisys of a time series

2012-12-04 Thread Antonio Silva
t; birthstimeseriesJanFeb1<-ts(birthstimeseriesJanFeb,frequency=2,start=c(1946,1)) > plot.ts(birthstimeseriesJanFeb1) > birthstimeseriesJanFebHW<-HoltWinters(birthstimeseriesJanFeb1) > plot(birthstimeseriesJanFebHW) > A.K. > > > > > - Original Message - >

Re: [R] partial analisys of a time series

2012-12-04 Thread Antonio Silva
:wind], start = start(x), frequency = f), seasonal) : time series has no or less than 2 periods What could be going wrong? Best regards Antonio 2012/12/4 PIKAL Petr > Hi > > > -Original Message- > > From: r-help-boun...@r-project.org [mailto:r-help-bounces@r- > &

[R] partial analisys of a time series

2012-12-04 Thread Antonio Silva
Dear list members I want to analyze separately the months of a time series. In other words, I want to plot and fit models for each month separately. Taking the example of http://a-little-book-of-r-for-time-series.readthedocs.org/en/latest/src/timeseries.html births <- scan("http://robjhyndman.co

[R] on Rclusterpp package usage

2012-11-07 Thread Antonio Silva
Hello I have a large dataset to make a cluster analysis and I'm trying to use Rclusterpp to do so. Nevertheless in a sample matrix analysis (see http://dl.dropbox.com/u/755659/gillnet.txt) I'm getting different results from Rclusterpp and hclust. Following the example from "An Introduction to Rc

Re: [R] indicating group numbers in a dendrogram

2012-03-03 Thread Antonio Silva
ext(cumsum(sapply(r,length)), rep(mean(tail(unique(cluc$hei),2)), length(r)), paste(unique(grp[cluc$ord]))) Best regards, Antonio 2012/3/2 Antonio Silva > Hi, > > Is it possible to place the group number in a cluster? > > The best example I found was at > https://www.

[R] indicating group numbers in a dendrogram

2012-03-01 Thread Antonio Silva
Hi, Is it possible to place the group number in a cluster? The best example I found was at https://www.crops.org/images/publications/cs/42/5/1584f4.jpeg (see I, II, IIIa, IIIb) It would help to identify the group given by cutree since branches can turn around and they necessarily are not plotted

Re: [R] VisualBasic "select case" commad in R

2011-08-31 Thread Antonio Silva
> > require(car) > ?recode > > for an alternative. > > HTH, > Jorge > > > On Wed, Aug 31, 2011 at 1:27 PM, Antonio Silva <> wrote: > >> Hello >> >> I'm translating a Visual Basic routine to R. >> >> Which command in R is si

[R] VisualBasic "select case" commad in R

2011-08-31 Thread Antonio Silva
Hello I'm translating a Visual Basic routine to R. Which command in R is similar to "select case" in VB? See the example: select case int(AG) case 0, 5, 8, 10 VAR = 37 case 1, 4 VAR = 70 case 3, 6, 9 VAR = 90 case 2, 7 VAR = 112 end select A chain of "if else" would not be very ele