Re: [R] I cannot get species scores to plot with site scores in MDS when I use a distance matrix as input. Problems with NA's?

stance matrix as input. Problems with NA's?Message-ID: <1322150277396-4104406.p...@n4.nabble.com>Content-Type: Try the daisy() function from the package "cluster", it seems to be able to handle NAs and non-dummy coded character variables metaMDS(daisy(df, metric="

[R] I cannot get species scores to plot with site scores in MDS when I use a distance matrix as input. Problems with NA's?

Hi, First I should note I am relatively new to R so I would appreciate answers that take this into account. I am trying to perform an MDS ordination using the function “metaMDS” of the “vegan” package. I want to ordinate species according to a set of functional traits. “Species” here refers t