Dear R-help colleagues,
I am looking for a way to read my txt file into R such that it can pass the
check_input() function and be processed by in GCalignR.
The vignette mentioned to save data in txt format, with first row listing
items, 2nd row listing RT and Area, third rows and afterwards concatenate
multiple RT and area from items listed in first row.
I did this but did not find an effective way to import this data. Tried
read.delim, scan, read individual and combine into a list. Saved to system.file
and read as the example data. None worked.
Any suggestions?
Thank you very much.
Hui
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C1 C2 C5 C6 C7 C8
RT Area
1.087 23496 1.092 24761 1.064 24072 1.054 25994 1.057 24694
1.055 25909
1.175 1414 1.176 1575 1.254 5875 1.256 5655 1.254 5733
1.253 5839
1.404 52325 1.403 53215 1.442 52240 1.439 52832 1.439 54252
1.439 52290
1.861 1612 1.856 1738 1.919 1414 1.915 1463 1.916 1182
1.921 2015
2.218 15769 2.209 16149 2.2 23198 2.175 24563 2.18 27456
2.186 28536
2.338 8597 2.332 7692 2.557 1236 2.553 1495 2.554 1483
2.552 1351
2.443 2141 2.444 1750 2.639 321 2.596 487 2.603 735
2.643 459
2.499 497 2.83 2708 2.675 418 2.684 1310 2.687 1403
2.696 1488
2.837 2702 4.783 3840 2.726 1672 2.772 524 2.779 309
2.783 749
4.803 3795 7.2 713 2.78 339 4.75 2898 4.75 2884
4.752 2593
7.214 626 7.367 766 4.795 2861 7.27 683 7.263 672
7.28 443
7.386 915 8.039 476 7.289 607 7.438 838 7.437 972
7.427 908
8.042 515 8.124 6042 7.467 901 8.086 375 8.089 407
8.101 601
8.134 9481 8.22 838 8.118 376 8.162 7503 8.156 10975
8.149 8229
8.231 1041 8.254 1357 8.195 10861 8.281 3246 8.274 3324
8.267 3170
8.261 1057 8.359 1055 8.312 2908 8.352 790 8.346 965
8.343 784
8.376 980 8.397 1386 8.392 878 8.396 1674 8.393 1707
8.381 1518
8.414 1013 8.571 734 8.423 1555 8.442 648 8.452 707
8.412 758
8.571 320 8.634 8970 8.484 915 8.584 1141 8.578 985
8.567 1196
8.643 12213 8.834 1065 8.616 565 8.68 10756 8.674 13686
8.668 11901
8.838 983 8.962 2493 8.71 12936 8.853 1428 8.835 1514
8.84 1353
8.977 1244 9.055 743 8.882 1161 8.979 4054 8.968 4347
8.966 4563
9.06 435 9.146 949 9 2702 9.07 868 9.064 703
9.055 967
9.152 1361 9.209 1006 9.103 466 9.213 1878 9.209 2152
9.197 1966
9.209 596 9.349 1212 9.236 1925 10.152 1183 10.137 1075
10.128 1015
9.355 1075 9.393 237 10.165 1118 10.548 1006 10.554 709
10.536 839
9.41 354 9.502 615 10.572 971 10.826 1354 10.819 1054
10.819 1054
9.512 372 9.573 886 10.853 1388 10.995 1650 10.994 1833
10.981 1533
9.578 577 10.051 1180 11.024 2037 11.619 19484 11.609 17742
11.601 18170
10.059 1077 10.473 1092 11.642 19604 11.878 1089 11.866 1101
11.846 1508
10.484 1298 10.644 1508 11.899 729 11.957 6499 11.94 6530
11.933 6785
10 .657 2334 10.879 2330 11.973 5520 12.096 42189 12.084 41771
12.075 44095
10.888 3244 11.485 19996 12.114 39444 12.286 1793 12.25 1752
12.249 1927
11.498 20784 11.582 558 12.294 1688 12.341 5841 12.321 6898
12.311 6569
11.594 445 11.735 1068 12.35 6045 12.366 6450 12.349 14981
12.342 14857
11.773 817 12.003 35631 12.379 14897 12.376 6997 12.428 14819
12.415 14277
12.016 33867 12.136 1363 12.457 13612 12.453 12494 12.536 33336
12.524 33801
12.147 1486 12.176 1826 12.565 33854 12 .561 31314 12.659 26947
12.641 24203
12.186 1575 12.327 9500 12.69 25310 12.683 23235 12.707 9326
12.699 10399
12.339 11960 12.396 6520 12.741 12097 12.742 12480 13.087 12188
13.068 8535
12.41 7822 12.488 8617 13.118 12055 13.108 7098 13.232 11416
13.206 11474
12.496 9540 12.57 23776 13.265 11045 13.252 12253 13.347 20966
13.32 21331
12.578 28845 12.644 10471 13.377 20499 13.363 20526 13.482 5801
13.439 6147
12.655 11676 12.779 10980 13.503 5641 13.488 5265 13.511 12986
13.484 13116
12.766 11653 12.783 7031 13.535 13844 13.517 12572 13.578 921
13.554 1252
12.783 8764 13.162 6416 13.601 1002 13.588 1135 13.894 1849
13.863 2147
13.164 11977 13.352 13815 13.917 1564 13.898 2094 13.968 480
13.937 618
13.345 13129 13.435 16657 13.977 427 13.973 578 14.128 3286
14.098 3628
13.431 18421 13.515 13485 14.143 2756 14.129 3441 14.304 18903
14.286 19712
13.519 15612 13.557 3951 14.339 15585 14.323 17879 14.342 6216
14.323 6810
13.55 5001 13.738 1087 14.368 6665 14.355 7136 14.408 7025
14.391 5334
13.741 917 14.021 2381 14.4 43 7464 14.4 31 5291 14.473 883
14.458 581
14.017 2374 14.088 786 14.512 759 14.498 632 14.636 1716
14.614 1615
14.084 681 14.248 2879 14.666 1727 14.654 1597 14.821 637
14.807 459
14.248 2927 14.344 7165 14.858 579 14.844 523 14.868 2800
14 .853 2894
14.351 8920 14.433 15019 14.901 2508 14.888 2615 14.969 13890
14.944 14862
14.434 13731 14.525 3757 14.993 12216 14.981 13671 15.028 2571
15.001 3066
14.522 6866 14.732 3251 15.044 3164 15.037 2768 15.098 943
15.08 861
14.735 3500 14.983 2082 15.112 769 15.099 952 15.157 426
15.156 509
14.985 2353 15.105 15932 15.209 689 15.191 607 15.269 15446
15.237 15880
15.108 15956 15.421 16155 15.285 16420 15.271 16940 15.324 1992
15.306 1665
15.425 17124 15.585 2190 15.349 1885 15.331 1950 15.463 18783
15.448 19986
15.581 2023 15.638 9845 15.493 16928 15.473 18614 15.507 36103
15.494 42566
15.644 11161 15.687 30713 15.537 34404 15.521 41083 15.6 24363
15.581 27581
15.685 28501 15.779 21858 15.623 22421 15.606 25217 15.758 1101446
15.731 1213450
15.78 21557 15.926 1080592 15.775 10 87291 15.763 1183430 15.925
9093 15.894 10130
15.93 1069995 16.097 9152 15.932 12095 15.918 12358 16.055 19702
16.025 25125
16.106 9227 16.209 25172 16.069 21303 16.0 54 24433 16.137 487
16.114 1153
16.228 23803 16.263 2587 16.167 953 16.143 880 16.218 684
16.19 2149
16.285 2531 16.374 976 16.238 2076 16.218 1682 16.477 1406
16.484 1177
16.401 719 16.858 9956 16.288 913 16.493 1011 16.729 13913
16.688 14671
16.663 1 955 17.389 17275 16.508 1503 16.723 12203 16.826 1286
16.816 1004
16.876 11076 17.448 7667 16.741 13165 16.805 1664 17.01 4659
16.991 2383
17.407 10626 17.641 3059 16.831 1855 17.024 2783 17.191 1332
17.166 822
17.459 1499 17.709 3956 17.039 2294 17.188 649 17.291 20604
17.261 17272
17.644 4168 17.807 10980 17.196 672 17.285 17891 17.35 10307
17.311 5486
17.722 6428 17.835 7845 17.301 13187 17.331 6446 17.489 1129
17.46 1216
17.851 4510 18.014 8067 17.342 4015 17.494 1275 17.539 3648
17.502 3294
18.025 1258 18.12 1379 17.493 885 17.529 3129 17.613 4993
17.586 5105
18.133 1437 18.194 26367 17.548 3620 17.616 4562 17.708 10737
17.693 5986
18.204 26100 18.4 3082 17.628 4412 17.727 6952 17.731 12913
17.714 7974
18.409 2991 18.461 1331 17.666 1618 17.744 8857 17.936 8429
17.902 5054
18.476 2139 18.561 2802 17.738 3079 17.937 5833 18.056 2395
18.012 2841
19.129 1467 19.01 4201 17.761 4925 18.046 2442 18.225 24065
18.196 24510
19.586 1605 19.111 1260 17.954 2376 18.228 24408 18.316 2931
18.278 2804
19.761 1530 19.243 3392 18.058 2530 18.308 2527 18.404 1340
18.373 1878
20.008 953 19.351 5667 18.242 22993 18.40 1 1395 18.609 302
18.895 922
20.396 2136 19.409 2163 18.321 3223 18.59 239 18.659 914
18.996 1390
20.944 1573 19.488 3393 1 8.428 1834 18.939 1440 18.953 3007
19.143 524
21.252 491 19.518 1774 18.6 09 379 19.011 1681 19.035 1557
19.261 892
21.278 325 19.662 468 18.938 815 19.174 1389 19.182 3328
19.629 1170
21.297 76 19 .731 3605 19.039 1471 19.29 1687 19.283 5741
19.989 949
21.319 278 19.942 3217 19.548 1052 19 .340 994 19.333 2751
20.36 1660
21.35 127 20.006 2807 19.678 1140 19.44 2081 19.417 2892
20.915 2475
21.367 490 20.183 678 20.03 1031 19.506 674 19.452 2203
21.271 590
21.377 474 20.229 1195 20.413 1790 19.58 232 19.5 738
21.31 428
21.409 1043 20.391 1906 20.967 1960 19.665 1704 19.609 728
21.338 276
21.476 334 20.911 2351 21.315 393 19.88 943 19.676 4223
21.366 208
21.506 1309 21.052 1095 21.348 260 19.968 589 19.893 2371
21.398 334
21.542 1359 21.105 1169 21.381 257 20.025 906 19.968 1489
21.412 576
21.571 3045 21.193 2739 21.402 179 20.392 1330 20.002 517
21.421 831
21.603 3402 21.227 1087 21.43 232 20.953 1944 20.105 443
21.455 1683
21.646 1674 21.245 2078 21.446 561 21.18 190 20.154 801
21.501 630
21.697 2972 21.278 6140 21.456 663 21.294 683 20.343 679
21.525 883
21.716 1874 21.302 1517 21.488 1664 21.328 774 20.387 2359
21.555 1869
21.766 3147 21.316 1699 21.535 503 21.358 363 20.835 1224
21.589 1216
21.838 3204 21.335 614 21.556 1011 21.378 463 20.941 801
21.619 3809
21.893 3108 21.366 1814 21.588 1768 21.411 368 20.987 1604
21.655 4235
21.39 4473 21.622 1680 21.428 798 21.042 1140
21.697 1778
21.407 2489 21.6 53 3777 21.437 746 21.188 1968
21.747 3184
21.422 3726 21.687 4026 21.472 1793 21.242 1043
21.764 1707
21.432 6815 21.73 1965 21.49 512 21.272 1597
21.815 2335
21.457 6420 21.781 2629 21.518 456 21.284 1259
21.886 2513
21.501 3066 21.795 1903 21.537 953 21.313 4927
21.944 2855
21.528 4837 21.849 2460 21.571 2011 21.343 2181
21.965 500
21.547 5767 21.923 2590 21.607 1524 21.358 2304
22.049 189
21.577 6171 21.979 2768 21.636 3790 21.379 2054
22.101 1158
21.6 3078 22.002 556 21.672 4453 21.412 3105
22.136 627
21.65 1086 22.089 207 21.714 2030 21.432 1438
22.263 721
21.663 3218 22.136 1246 21.765 3460 21.44 2267
22.521 2106
21.694 3298 22.17 679 21.783 1630 21.459 2518
21.715 1089 22.295 919 21.833 2601 21.477 2225
21.765 2638 22.555 1909 21.904 2715 21.487 4404
21.826 3773 21.962 2870 21.513 5446
21.892 2691 21.988 454 21.559 3002
22.065 163 21.585 2368
22.119 1082 21.604 2721
22.153 664 21.629 4970
22.279 997 21.659 3826
22.539 1796 21.704 929
21.715 1352
21.754 2205
21.763 1992
21.819 2216
21.886 3249
21.941 2793
21.962 566
22.051 225
22.098 1219
22.129 690
22.26 912
22.521 1948
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