Re: [R] Help confidence interval graphics

2012-04-25 Thread Michael Bibo
tically or horizontally). By making the range on that axis larger, you create more 'white space' at each end of the scale and the lines cluster together in the centre more. Note that you can also customise your axes with axis(), like other plots.

Re: [R] need advice on using excel to check data for import into R

2012-04-24 Thread Michael Bibo
of a Database Package for Research Projects" for when "you are reaching the limits of Excel". Hope this helps, Michael Bibo Queensland Health __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] Organizations where IT has approved the use of R software

2012-04-13 Thread Michael Bibo
lynnland ontario.ca> writes: > I am putting forward a request that R be considered "approved" software in > my organization. Never an easy task, this is made much more difficult given > that it is open source software (sends the IT gang into little fits). So, I > am compiling a list of organiz

Re: [R] Reading SPSS: underlying numerical codes

2012-04-12 Thread Michael Bibo
. To change this, see the "levels" argument of the factor command: ?factor Hope this helps, Michael Bibo Queensland Health __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide ht

Re: [R] Is it there any std pattern in R which show same representation style of ppt found on net

2012-03-31 Thread Michael Bibo
so http://jeromyanglim.blogspot.com.au/2010/08/getting-started-with-beamer-tips-and.html ). You might also like to have a look at http://www.lyx.org/ as an alternative front-end for Latex, and http://impressive.sourceforge.net/ for displaying presentations in PDF form. Ho

Re: [R] Export Created Variables to SPSS/.csv

2012-03-27 Thread Michael Bibo
omatically in R. Somthing like: all.data <- data.frame (imported.data, created.variable1, created.variable2, etc) Michael Bibo Queensland Health __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the post

Re: [R] barplot with both color and shading

2012-02-22 Thread Michael Bibo
//finzi.psych.upenn.edu/Rhelp10/2010-September/252219.html Michael Bibo michael_bibohealth.qld.gov.au __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide

Re: [R] Problem with ploting fitted values

2011-12-13 Thread Michael Bibo
blem with adding them to your original plot is that the x values (2:144) are out of the range of the x-axis of the original plot, which is of a time series. Try: # transforming into parallel time series AIRlm$fitted.ts <- ts(AIRlm$fitted, start = c(1949,1), frequency =

Re: [R] Categorical bubble plot

2011-04-14 Thread Michael bibo
he value related to x and y. > Attached to the email is a pic of what I would like to do. > > I do hope someone can help me. > Have a look at function balloonplot in package gplots. http://finzi.psych.upenn.edu/R/library/gplots/html/balloonplot.html It may do what you want or at l

Re: [R] problems with mosaic plot

2010-12-15 Thread Michael Bibo
) : object 'arthritis' not found" Do you have another graphics device open? Try: graphics.off() to close all currently open devices, and then re-run mosaicplot command, but R is case-sensitive, hence: mosaicplot(Arthritis) mosaicplot(~ Sex + Treatment + Improved, data = Arthritis, co

Re: [R] Mean and individual growth curve trajectories

2010-10-31 Thread Michael Bibo
} ) and have you considered: xyplot(Reaction ~ Days, data = sleepstudy, group = Subject, type = 'l', panel=function(...){ panel.xyplot(...) panel.loess(...,fun=mean,horizontal=FALSE,col='red',lwd=3) } ) for a smoother curve? Hope it helps, Michael Bibo

Re: [R] Highlighting a few bars in a barplot

2010-09-09 Thread Michael Bibo
es.arg=rep("",4), # a second superimposed plot xlim = c(0,5000), # is necessary because of the beside=FALSE, # limitations of the angle argument horiz=TRUE, density=8, angle=90, col="black", add=TRUE ) Hope it helps, Michael Bibo michael_bibohe

Re: [R] Linux Editor

2010-08-02 Thread Michael Bibo
ut not always > the most convenient. > > Is there anything comparable to the mac version of R with its built in > console, editor, etc?? > > thanks! There is also Rgedit for use with the Gnome default text editor gedit: http://www.stattler.com/article/using-gedit-o

Re: [R] how to update R10.0 to R11.0 in Ubuntu linux

2010-05-25 Thread Michael Bibo
;Apply' on the main menubar. These last few steps are the equivalent of the commands above. You can also mark individual software packages for upgrade if you do not wish to upgrade your whole system. Finally, note that R-2.11.1 is only days away. Michael Bibo Queensland Health

Re: [R] Are loops handled differently in newer versions of R?

2010-03-16 Thread Michael Bibo
t the mac is doing, but if you change the syntax of the loop as follows it gives the same answers: > for ( i in 1:length(lab8.dat[,1]) ) + p_unadj[i]<-calc.prob.t(lab8.dat[i,2], lab8.dat[i,3]) > p_unadj [1] 0.034939481 0.015743706 0.089287030 0.0

Re: [R] Preferred Method for Reading in and Processing Access Database

2009-11-18 Thread Michael Bibo
g package RODBC quite straightforward. I usually create a query in Access to assemble the data I want from various tables, and then just access the query from R via RODBC. Michael Bibo Queensland Health __ R-help@r-project.org mailing list https:/

Re: [R] installation problem

2009-09-16 Thread Michael Bibo
Uwe Ligges statistik.tu-dortmund.de> writes: > or just say > > install.packages("XML") > > as that CRAN extras repository is already a default under Windows. > > Best, > Uwe Ligges > Thanks, Uwe. I had tried that, with no success. It turned out that starting R with the "--internet2" optio

Re: [R] installation problem

2009-09-16 Thread Michael Bibo
x.ac.uk/pub/RWin/bin/windows/contrib/2.9/ kindly provided by Professor Brian D. Ripley.>> Thus you can download the Windows zip file from there, and install it using the "install package(s) from local zip files..." menu option. Michael Bibo Queensland Health _

Re: [R] R on Multi Core

2009-09-13 Thread Michael Bibo
res?? > (Watching my system performance meter now is interesting, Running R will > hold a single core at 100% perfectly, but the other core sites idle.) > You might be interested in this article: http://www.jstatsoft.org/v31/i01 Michael Bibo __ R-h

Re: [R] SPSS Statistics-R Integration Plug-In

2009-09-10 Thread Michael Bibo
> . The links are: R Sources -> Windows -> base -> > Previous Releases. The direct link is: http://cran.at.r- > project.org/bin/windows/base/old/ That should of course read "R Binaries -> Windows -> base -> Previous Releases". __ R-help@r-proje

Re: [R] SPSS Statistics-R Integration Plug-In

2009-09-08 Thread Michael Bibo
is: http://cran.at.r- project.org/bin/windows/base/old/ Michael Bibo Queensland Health __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.

Re: [R] NotePad++ Syntax file

2009-08-10 Thread Michael Bibo
about the future inclusion of R as a supported language in Notepad++: http://sourceforge.net/forum/forum.php?thread_id=3313869&forum_id=880832. Michael Bibo Queensland Healh __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-he

Re: [R] R editor that will work with Rcmdr

2009-03-06 Thread Michael Bibo
eforge.net/projects/npptor/) work fine alongside Rcmdr, but both of them are Windows only. Other IDEs such as Eclipse I haven't tested. Hope this is helpful, Michael Bibo Queensland Health __ R-help@r-project.org mailing list https://stat.ethz.ch/

Re: [R] portable R editor

2009-03-02 Thread Michael Bibo
tepad.html) use Notepad++'s built-in capacity to run external tools to create new files from templates. Michael Bibo Queensland Health __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the postin

Re: [R] ggobi install

2009-02-12 Thread Michael Bibo
pkg-config man page for more details. Mark, The first thing I would look at is whether there are any "*-dev" packages in synaptic for the libraries etc that are 'missing'. These -dev packages contain the header files and are not necess

Re: [R] plots and text to the same output file

2009-02-11 Thread Michael Bibo
Greg Snow imail.org> writes: > > odfWeave works just fine for me on windows and the XML package shows up in my list of packages. You may be > overthinking the problem, for most of my odfWeave projects I don't need odfInsertPlot, just use fig=TRUE > in the code chunk and only include the code

Re: [R] Truncated labels with mosaicplot

2009-02-10 Thread Michael Bibo
Marcin Kozak gmail.com> writes: > > How can I deal with truncated labels in the mosaicplot()? Look at the example: > mosaicplot(~ gear + carb, data = mtcars, color = TRUE) > > Look at "carb" (the number of carburetors): the label "8" is > truncated. How this might be dealt with? > Ummm... not

Re: [R] odfweave sample code error

2009-02-04 Thread Michael Bibo
ou may be able to get winzip working with odfWeave through odfWeaveControl(), but I haven't tried this myself. See: http://finzi.psych.upenn.edu/R/Rhelp02/archive/118223.html Hope this helps, Michael Bibo Queensland Health __ R-help@r-project.org

Re: [R] How do I get my IT department to "bless" R?

2009-01-29 Thread Michael Bibo
27;s policies refer to 'installing' software, you can always run it portably, even from an external drive (at least in a Windows environment). Ultimately, though, I think the thing that helped most to convince our IT department to let me try R was when they themselves had the nightmare of

Re: [R] Generating GUI for r-scripts

2009-01-06 Thread Michael Bibo
ator (http://rgg.r-forge.r-project.org/). There is also a specific mailing list for gui discussions: http://dir.gmane.org/gmane.comp.lang.r.gui. Hope this helps, Michael Bibo __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo

Re: [R] Repository missing hmisc

2008-10-29 Thread Michael Bibo
stephen sefick gmail.com> writes: > I couldn't download this either with install.packages > from two or three mirrors- I haven't tried since thinking that the > binaries were being built for windows and mac ... If this isn't right > I would be interested. I wondered about this to. If you go

Re: [R] Creating GUIs for R

2008-10-08 Thread Michael Bibo
Generator (http://rgg.r-forge.r-project.org/gettingstarted.html) might be sufficient to meet your needs. I have only just started looking at it myself, so I'm not speaking from experience, but it seems fairly straightforward to define Gui components in an XML file. Michael Bi

Re: [R] Problems with playwith()

2008-09-03 Thread Michael Bibo
I have all the required packages installed. I have no solution, but I have also experienced the same behaviour when 'playing with' the latticist GUI in the playwith package: WinXP; R-2.7.2; GTK 2.12.9. As a GTK comparison, I have not observed the same errors when using rattle GUI. Micha

Re: [R] "license" for a university

2008-09-03 Thread Michael Bibo
...and, interestingly, the GPL has recently been upheld as enforceable by the United States Court of Appeals for the Federal Circuit: http://www.groklaw.net/article.php?story=2008081313212422 Michael Bibo Queensland Health __ R-help@r-project.org

Re: [R] Using interactive plots to get information about data points

2008-08-26 Thread Michael Bibo
ength(z)),z" pattern essentially defines x,y coordinates of all the points that make up the boxplot - for a univariate boxplot, all have an 'x' coordinate of 1). In a similar vein, the latticist GUI (package playWith - need GTK libraries or runtime (windows) inst

Re: [R] Using interactive plots to get information about data points

2008-08-23 Thread Michael Bibo
i package linking directly to it from R. GGobi is built specifically for this kind of interactive purpose. > I am also trying to produce multiple small > plots. For example, four side-by-side boxplots for each of the four > variables A, B, C, D. ?par... eg par(mfrow=c(1,4)) (for base gr

Re: [R] Bubble plots

2008-08-03 Thread Michael Bibo
Cody Hamilton Edwards.com> writes: > > Is there a way to create a 'bubble plot' in R? > > For example, if we define the following data frame containing the level of y observed for 5 patients at three > time points: > > time<-c(rep('time 1',5),rep('time 2',5),rep('time 3',5)) > y<-c('a','b','c

Re: [R] Graphics not working for R in ubuntu

2008-07-19 Thread Michael Bibo
'. Have you tried a simple plot command? This should automatically open the default graphics device (X11). For a GUI under Linux, you have a number of choices including (X)emacs+ESS; JGR; RKward; and, of course, RCmdr. See the 'R GUI Projects' page on your favourit

Re: [R] emacs and R

2008-03-02 Thread Michael Bibo
atter deals with Xemacs on windows, it does has useful info about using (X)emacs + ess in general. Michael Bibo Queensland Health __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide h

Re: [R] Problems with Rcmdr unter JGR (Windows XP)

2008-02-14 Thread Michael Bibo
mdr not responding and then R crashing) with Rcmdr and JGR. Under Linux, I have had Emacs/ESS and Rcmdr running together. I don't know about JGR, as I don't presently have it installed on a Linux box. If you want to use Rcmdr under Windows, the combination of R-Gui, Tinn-R an

Re: [R] HTML help search in R 2.6.0 v 2.6.1

2007-12-05 Thread Michael Bibo
Peter Dalgaard biostat.ku.dk> writes: > > > > Has something changed from 2.6.0 to 2.6.1 that may require JVM > 1.4.1? > > If > > so, I can use that information to request an upgrade of my JVM. > > > > > > > Hmm, could be. They got rebuilt on my system and committted at some > point in

[R] HTML help search in R 2.6.0 v 2.6.1

2007-12-05 Thread Michael Bibo
browser, including R 2.6.0 HTML help search, so I presume java is enabled. Has something changed from 2.6.0 to 2.6.1 that may require JVM > 1.4.1? If so, I can use that information to request an upgrade of my JVM. Michael Bibo Research Offi

Re: [R] Is R portable?

2007-12-04 Thread Michael Bibo
Tom Backer Johnsen psych.uib.no> writes: > > I am also informed that it is possible to run Latex in this manner. > http://finzi.psych.upenn.edu/R/Rhelp02a/archive/107419.html refers to http://at-aka.blogspot.com/2006/06/portable-emacs-22050-on-usb.html which can give you a portable emacs +