[R] retrieving protein for swissport‏

2015-02-27 Thread Ron Flatau
I Try to run this script on order to get all the protein named Delta 9 acyl CoA desaturase. library(seqinr) choosebank("swissprot") D9aCd <- query("Delta 9 acyl-CoA desaturase","KD=Delta 9 acyl-CoA desaturase") Nothing happen i be glad to know what i do wrong... Thnks [[alternative

[R] retrieving protein for swissport

2015-02-26 Thread Ron Flatau
It's possible to retrieve protein for swissport by protein name?? I try using seqinr and query but i didnt find a way to get all protein that named Delta 9 acyl CoA desaturase. If some one have an idea i be glad :P thank you all ᐧ [[alternative HTML version deleted]]

[R] help

2015-02-24 Thread Ron Flatau
I try to create a dot plot loop for 6 protein, that mean that i want to do dot plot to 36 pairs of protein in a loop library(seqinr) Seq1 <- read.fasta(file ="C:/D.fasta") Protinename1 <- Seq1[[1]] Protinename2 <- Seq1[[2]] Protinename3 <- Seq1[[3]] Protinename4 <- Seq1[[4]] Protinename5 <- Seq1[[5