f diss=FALSE then "euclidean" was
> use.So, I interpret that a matrix of dissimilarity is generated
> automatically.
>
> Problems may be in your data. Indeed
>
> pam(ruspini, 4)$diss
>
> write a dissimilaty matrix
>
> while
> pam(MYdata,10)$diss
>
> wite
tering, file=filenameclu,sep=",")
>
>
> 2017-08-17 10:28 GMT+02:00 Sema Atasever <s.atase...@gmail.com>:
>
>> Dear Authorized Sir / Madam,
>>
>> I have a data set in which each row indicates an amino asid and each
>> column corresponds
>> t
Dear Authorized Sir / Madam,
I have an R script file in which it includes PAM Clustering codes:
*when i ran R script i am getting this error:*
*Error in pam(d, 10) : x is not a numeric dataframe or matrix.*
*Execution halted*
How can i fix this error?
Thanks in advance.
data.csv
eded:
>> #SBATCH --qos=
>> #SBATCH --mem=
>> #SBATCH --mail-type=begin,end,abort
>> #SBATCH --mail-user=use...@email.com
>> #SBATCH --time=
>> #SBATCH --nodes=
>> #SBATCH --job-name=myjob
>> #SBATCH --output=/home//run-%A_%a.Sout #special output filenam
Dear Authorized Sir / Madam,
I have an R script file in which it includes this lines:
How can i to submit this R jobs via SLURM? Thanks in advance.
*testscript.R*
data=read.table("seqDist.50", header=FALSE)[-1]
attach(data)
d=as.matrix(data)
library(cluster)
cluster.pam = pam(d,6)
Dear Authorized Sir / Madam,
If you don't mind, I want to ask how can i calculate negative log of the
E-Values in R.
*For Example: *
What is the negative log of the 4e-108?
I would appreciate if you could advise me some methods.
Thanks in advance.
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