[R] snp-chip table

2011-03-10 Thread shai uliel
Dear R helpers I have a table and i need to make new table table1: sire snp1 snp2 snp3 snp4 snp5 snp6 snp7 snp8 snp9 snp10 snp11 snp12 snp13 snp14 snp15 8877 -1 -1 -1 -1 0 0 -1 -1 -1 0 1 1 1 -1 -1 7765 1 1 1 0 0 0 -1 1 1 1 0 0 0 1 0 8766 1 1 -1 0 -1 -1 0 -1 0 -1 -1 -1 0 1 0 6756

[R] SNP IMPUTATION

2011-01-22 Thread shai uliel
Hi ihave one table that look like SNP1 SNP2 SNP3 SNP4 SNP5 SIRE1 1 -1 -1 1 -1 SIRE2 1 -1 1 1 1 SIRE3 -1 -1 1 1 0 SIRE4 -1 1 1 0 1 SIRE5 -1 1 -1 -1 1 SIRE6 0 0 0 1 -1 SIRE7 -1 0 -1 1 1 SIRE8 1 -1 NA 0 NA SIRE9 -1 1 1 -1 -1 SIRE10 1 1 1 1 1

[R] R TABELS

2011-01-22 Thread Shai & Rivka Uliel
Hi ihave one table that look like SNP1 SNP2 SNP3 SNP4 SNP5 SIRE1 1 -1 -1 1 -1 SIRE2 1 -1 1 1 1 SIRE3 -1 -1 1 1 0 SIRE4 -1 1 1 0 1 SIRE5 -1 1 -1 -1 1 SIRE6 0 0 0 1 -1 SIRE7 -1 0 -1 1 1 SIRE8 1 -1 NA 0 NA SIRE9 -1 1 1 -1 -1

[R] R two tabales filter

2011-01-22 Thread shai uliel
hi i have one table sireall.txt SNP1 SNP2 SNP3 SNP4 SNP5 SIRE1 1 -1 -1 1 -1 SIRE2 1 -1 1 1 1 SIRE3 -1 -1 1 1 0 SIRE4 -1 1 1 0 1 SIRE5 -1 1 -1 -1 1 SIRE6 0 0 0 1 -1 SIRE7 -1 0 -1 1 1 SIRE8 1 -1 NA 0 NA SIRE9 -1 1 1 -1 -1 SIRE10 1 1 1 1 1 SIRE100 1 1 -1 1 1 [[alternative HTML

[R] Explained GLZ model variation

2010-11-22 Thread Shai
Hello, I am using the MASS library to create some GLZ models. How can I know how much (%) of the variation is explained by the model, and if it is significant? I did not see this in the anova() or summary() tables... Thanks! Shai __ R-help@r

Re: [R] [R-pkgs] ez version 2.0

2010-09-29 Thread Shai
Hi Thanks for the wonderful package! I have a question on plotting. How do I control the dodging (like the position_dodge in ggplot2) of the points after creating a plot with ezPlot? when plotting a 2-way ANOVA the error bars cover each other... Thanks! shai On Aug 31, 2:53 pm, Mike Lawrence