Re: [R] partykit ctree: minbucket and case weights

2014-06-25 Thread Torsten Hothorn
at the top of the document. Below that is the version of R used and some of the results I obtained. Many thanks! Amber  On Wed, 4 Jun 2014 09:12:15 +0200 (CEST) Torsten Hothorn torsten.hoth...@uzh.ch wrote: On Tue, 3 Jun 2014, Amber Dawn Nolder wrote: I apologize for my lack of knowledge with R. I

Re: [R] Fwd: cforest sampling methods

2014-03-20 Thread Torsten Hothorn
Hi all, I've been using the randomForest package and I'm trying to make the switch over to party. My problem is that I have an extremely unbalanced outcome (only 1% of the data has a positive outcome) which makes resampling methods necessary. randomForest has a very useful argument that is

Re: [R] Permutation Test on Interactions {coin}

2013-09-23 Thread Torsten Hothorn
Axel, you need a model for such type of analyses and coin is completely model-free. Torsten On Mon, 23 Sep 2013, Axel Urbiz wrote: Dear List, I'm interested in performing a permutation test on the interaction between a binary treatment indicator and a covariate (either continuous or

Re: [R] Party package: varimp(..., conditional=TRUE) error: term 1 would require 9e+12 columns (fwd)

2011-10-17 Thread Torsten Hothorn
I would like to build a forest of regression trees to see how well some covariates predict a response variable and to examine the importance of the covariates. I have a small number of covariates (8) and large number of records (27368). The response and all of the covariates are continuous

Re: [R] Fwd: Re: Party extract BinaryTree from cforest?

2011-10-06 Thread Torsten Hothorn
-- Forwarded message -- Date: Wed, 5 Oct 2011 21:09:41 + From: Chris christopher.a.h...@gmail.com To: r-h...@stat.math.ethz.ch Subject: Re: [R] Party extract BinaryTree from cforest? I found an internal workaround to this to support printing and plot type simple,

[R] [R-pkgs] `partykit': A Toolkit for Recursive Partytioning

2011-10-04 Thread Torsten Hothorn
New package `partykit': A Toolkit for Recursive Partytioning The purpose of the package is to provide a toolkit with infrastructure for representing, summarizing, and visualizing tree-structured regression and classification models. Thus, the focus is not on _inferring_ such a tree structure

Re: [R] glht (multcomp): NA's for confidence intervals using univariate_calpha (fwd)

2011-09-05 Thread Torsten Hothorn
fixed @ R-forge. New version should appear on CRAN soon. Thanks for the report! Torsten -- Forwarded message -- Date: Sat, 3 Sep 2011 23:56:35 +0200 From: Ulrich Halekoh ulrich.hale...@agrsci.dk To: r-help@r-project.org r-help@r-project.org Subject: [R] glht (multcomp): NA's

Re: [R] cforest - keep.forest = false option? (fwd)

2011-07-20 Thread Torsten Hothorn
-- Forwarded message -- Date: Mon, 18 Jul 2011 10:17:00 -0700 (PDT) From: KHOFF kuph...@gmail.com To: r-help@r-project.org Subject: [R] cforest - keep.forest = false option? Hi, I'm very new to R. I am most interested in the variable importance measures that result from

Re: [R] Fwd: varimp_in_party_package

2011-06-21 Thread Torsten Hothorn
of conditioning variables by increasing the `threshold' parameter to something like .8 Best, Torsten there is a factor with (too) many levels in your data frame `rawinput'. summary(rawinput) will tell you which one. Torsten Quoting Torsten Hothorn torsten.hoth...@stat.uni-muenchen.de

Re: [R] Fwd: varimp_in_party_package

2011-06-16 Thread Torsten Hothorn
Hello everyone, I use the following command lines to get important variable from training dataset. data.controls - cforest_unbiased(ntree=500, mtry=3) data.cforest - cforest(V1~.,data=rawinput,controls=data.controls) data.cforest.varimp - varimp(data.cforest, conditional = TRUE) I got

Re: [R] question regarding qmvnorm

2011-04-21 Thread Torsten Hothorn
On Wed, 20 Apr 2011, Ravi Varadhan wrote: If you had told us what the error message was, my job would have been easier. But, at least you provied the code, so it was not hard for me to see where the problem was. There is a problem with the strategy used by `qmvnorm' to locate the initial

Re: [R] missing values in party::ctree

2011-02-18 Thread Torsten Hothorn
On Thu, 17 Feb 2011, Andrew Ziem wrote: After ctree builds a tree, how would I determine the direction missing values follow by examining the BinaryTree-class object? For instance in the example below Bare.nuclei has 16 missing values and is used for the first split, but the missing

Re: [R] Problems with pdf device using plot glht function on multcomp library.

2010-09-15 Thread Torsten Hothorn
Dear Ken, it works for me on Linux. However, the print() commands around plot() are not necessary. Torsten __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

Re: [R] error when using multcomp and lm

2009-12-18 Thread Torsten Hothorn
On Fri, 18 Dec 2009, Achim Zeileis wrote: On Fri, 18 Dec 2009, chrischizinski wrote: Just in case anyone ever has similar issues, it appears that 'glht' does not work without an intercept. That is not precise enough to be useful. I've had a look again and appears to be the case that mcp()

Re: [R] Computing multivariate normal probabilities. Was: Re: Problem with Numerical derivatives (numDeriv) and mvtnorm

2009-11-23 Thread Torsten Hothorn
On Sun, 22 Nov 2009, Ravi Varadhan wrote: Hi Torsten, Hi Ravi, It would be useful to warn the users that the multivariate normal probability calculated by pmvnorm using the GenzBretz algorithm is random, i.e. the result can vary between repeated executions of the function. only if a

Re: [R] (Parallel) Random number seed question...

2009-11-16 Thread Torsten Hothorn
would be to simply write a script to generate n.rand numbers, records the .Random.seed and proceeds in that manner- inelegant, but effective. My question here is Is there a better way? (mvtnorm part directed to Torsten Hothorn) To further clarify, it seems there is a different RNG for normal (rnorm

Re: [R] OT: a weighted rank-based, non-paired test statistic ?

2009-06-09 Thread Torsten Hothorn
Date: Fri, 5 Jun 2009 16:09:42 -0700 (PDT) From: Thomas Lumley tlum...@u.washington.edu To: dylan.beaude...@gmail.com Cc: 'r-h...@stat.math.ethz.ch' r-h...@stat.math.ethz.ch Subject: Re: [R] OT: a weighted rank-based, non-paired test statistic ? On Fri, 5 Jun 2009, Dylan Beaudette wrote: Is

Re: [R] error using lapply with oneway_test (coin package)

2009-05-07 Thread Torsten Hothorn
is not equal to 0 Thanks, Duncan. Torsten I've cc'd Torsten Hothorn, the maintainer of coin. Duncan Murdoch Thank you, Matthieu Matthieu Dubois Post-doctoral fellow Psychology and NeuroCognition Lab (CNRS UMR 5105) Université Pierre Mendès-France BP47 --- 38040 Grenoble Cedex 9 --- France

Re: [R] spatial probit/logit for prediction

2008-08-20 Thread Torsten Hothorn
Hi Robb, the gamboost() function in package `mboost' may help. The details are described in @article{Kneib+Hothorn+Tutz:2009, author = {Thomas Kneib and Torsten Hothorn and Gerhard Tutz}, title = {Variable Selection and Model Choice in Geoadditive Regression Models}, journal

Re: [R] Random Forest (fwd)

2008-06-07 Thread Torsten Hothorn
Hello Is there exists a package for multivariate random forest, namely for multivariate response data ? It seems to be impossible with the randomForest function and I did not find any information about this in the help pages ... party:::cforest can do, here is an example: y -

Re: [R] Rpart and bagging - how is it done?

2008-03-07 Thread Torsten Hothorn
the control params to their minimum and relying on pruning. BTW, it is inaccurate to call these trees 'non-pruned' -- the default setting of cp is still (potentially) doing quite a lot of pruning. Torsten Hothorn can explain why he chose to do what he did. There's a small (but only small

[R] R News, volume 7, issue 2 is now available (fwd)

2007-11-02 Thread Torsten Hothorn
Dear useRs, The October 2007 issue of R News is now available on CRAN under the Documentation/Newsletter link. Torsten (on behalf of the R News Editorial Board) ___ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-announce