Re: [R] DESeq vs DESeq2 different DEGs results

2014-05-09 Thread Arunkumar Srinivasan
You're on the wrong list. This is more appropriate on the bioconductor mailing list. On Mon, May 5, 2014 at 9:42 AM, Catalina Aguilar Hurtado wrote: > Hi, > > I want to compare DESeq vs DESeq2 and I am getting different number of DEGs > which I will expect to be normal. However, when I compare t

[R] DESeq vs DESeq2 different DEGs results

2014-05-05 Thread Catalina Aguilar Hurtado
Hi, I want to compare DESeq vs DESeq2 and I am getting different number of DEGs which I will expect to be normal. However, when I compare the 149 genes ID that I get with DESeq with the 869 from DESeq2 there are only ~10 genes that are in common which I don’t understand (using FDR <0.05 for bot