Re: [R] Different output for lm Mac vs PC

2014-01-15 Thread Marc Schwartz
Devin, You should find out when and how that option was altered from the default, lest you find that virtually any modeling that you do on the Mac will be affected by that change, fundamentally altering the interpretation of the model results. Regards, Marc On Jan 15, 2014, at 7:17 AM,

Re: [R] Different output for lm Mac vs PC

2014-01-15 Thread CASENHISER, DEVIN M
Yes that's it! My mac has: options('contrasts') $contrasts [1] contr.sum contr.poly whereas the PC has $contrasts unordered ordered contr.treatment contr.poly I've changed the mac with

[R] Different output for lm Mac vs PC

2014-01-14 Thread CASENHISER, DEVIN M
I've noticed that I get different output when running a linear model on my Mac versus on my PC. Same effect, but the Mac assumes the predictor as a 0 level whereas the PC uses the first category (alphabetically). So for example (using Bodo Winter's example from his online linear models

Re: [R] Different output for lm Mac vs PC

2014-01-14 Thread Marc Schwartz
On Jan 14, 2014, at 2:23 PM, CASENHISER, DEVIN M de...@uthsc.edu wrote: I've noticed that I get different output when running a linear model on my Mac versus on my PC. Same effect, but the Mac assumes the predictor as a 0 level whereas the PC uses the first category (alphabetically). So

Re: [R] Different output for lm Mac vs PC

2014-01-14 Thread Greg Snow
I would suggest running the code: options('contrasts') on both machines to see if there is a difference. Having the default contrasts set differently would be one explanation. On Tue, Jan 14, 2014 at 2:28 PM, Marc Schwartz marc_schwa...@me.com wrote: On Jan 14, 2014, at 2:23 PM, CASENHISER,

Re: [R] Different output for lm Mac vs PC

2014-01-14 Thread Duncan Mackay
-Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Marc Schwartz Sent: Wednesday, 15 January 2014 07:29 To: CASENHISER, DEVIN M Cc: r-help@r-project.org Subject: Re: [R] Different output for lm Mac vs PC On Jan 14, 2014, at 2:23 PM

Re: [R] Different output for lm Mac vs PC

2014-01-14 Thread Marc Schwartz
Good catch Greg. The Mac output observed can result from either: options(contrasts = c(contr.helmert, contr.poly)) or options(contrasts = c(contr.sum, contr.poly)) being run first, before calling the model code. I checked the referenced tutorial and did not see any steps pertaining to