[R] Fisher's Exact test

2011-04-06 Thread Jim Silverton
Hello, I have a matrix, X2 ith 2 columns and I want to do the fisher's exact test on each row. However, it is too slow and I would like to use the sage.testsage command from the library called sage.test(datasnp[,1], datasnp[,2], n1 =100, n2 =100) -- Thanks, Jim. [[alternative HTML versi

Re: [R] Fisher's exact test

2009-07-17 Thread Duncan Murdoch
On 7/17/2009 12:13 PM, James Allsopp wrote: Hi, I'm trying to run Fisher's Exact test on the data below, but I'm not sure how interpret the data shown. Can someone tell me what this is saying? Looking at the numbers it should be that there's no significant difference between the HDL and LDL, but

Re: [R] Fisher's exact test

2009-07-17 Thread Dieter Menne
James Allsopp-2 wrote: > > Hi, > I'm trying to run Fisher's Exact test on the data below, but I'm not > Bound Unbound > HDL27 9 > LDL 8 2 >> fisher.test(data) > > At odds of 3 and 4 with one count =2, even the best test won't help. Dieter -- View this message in co

[R] Fisher's exact test

2009-07-17 Thread James Allsopp
Hi, I'm trying to run Fisher's Exact test on the data below, but I'm not sure how interpret the data shown. Can someone tell me what this is saying? Looking at the numbers it should be that there's no significant difference between the HDL and LDL, but a p-value of 1 seems high. Is the low value in