Try this: mod = lm(methcol ~ exposure+X1+X2+X3+batch, data = meth_matrix) res=coef(summary(mod))[2,]
It will good if you give a subset of data you are working on by dput. Raghu On Sat, Jul 12, 2014 at 3:11 PM, Jessica Timms <j.a.ti...@newcastle.ac.uk> wrote: > Hi, > > > > I'm quite new to R and currently trying to use lm to fit linear models but > I am currently stuck my code is as follows: > > > > Model1 = function(meth_matrix,exposure, X1, X2, X3, batch) { > > mod = lm(meth_matrix[, methcol]~exposure+X1+X2+X3+batch) > > res = summary(mod)$coef[2,] > > > > system.time(indiv.results <- mclapply(setNames(ncol=473864(cord_betas)), > dimnames(cord_betas)[[2]]), Model1, meth_matrix=cord_betas, > exposure=filtered_pheno, X1=covariates$k032, X2=covariates$k021, > X3=covariates$kz029, batch=pdata.B1221.cord$BCDPlate)) > > > } > > > > I am not sure if this will make any sense or if you need any more > information? > > Any help or guidance would be massively appreciated. > > > > Best wishes > > > > Jessica Timms > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.