Please keep R-help in the "Copy" list.
Please compose your messages in plain text, not HTML.
On Thu, 13 Apr 2023 15:59:49 +0800 (GMT+08:00)
"Dezhi Wang" wrote:
> This is my config.log
Please don't send any more screenshots. They are needlessly large and
impossible to copy text from. You could
On Thu, 13 Apr 2023 14:53:14 +0800 (GMT+08:00)
"Dezhi Wang" wrote:
> [New Thread 0x7fffe660a700 (LWP 3791)]
> [Thread 0x7fffe660a700 (LWP 3791) exited]
> Program received signal SIGSEGV, Segmentation fault.
> 0x7fffe50c0fe5 in intel_aes_gcmAAD () from
> /lib64/libfreeblpriv3.so
You didn't po
On Wed, 12 Apr 2023 16:04:55 +0800 (GMT+08:00)
"Dezhi Wang" wrote:
> I run R 4.2.2 on CentOS-7.6.
Thank you for this useful information. Could you tell us how this build
of R was installed on this machine?
> > install.packages('sf')
> --- Please select a CRAN mirror for use in this session --
Hello,
I run R 4.2.2 on CentOS-7.6. I install package through
install.packages("sf").It threw the above error:
> install.packages('sf')
--- Please select a CRAN mirror for use in this session ---
*** caught segfault ***
address 0x60, cause 'memory not mapped'
Traceback:
1: download.file(url,
This appears to be a case of insufficient understanding of statistics, which is
not on topic for r-help. Look at how well the per-firm models would work... my
guess is that some of the firms have insufficient data for useful analysis. If
that is not it, consider providing a more concrete example
Dear Arne,
thank you very much upfront for your time that you invest in answering my
question.
I'm using your systemfit R package to analyze if companies risk appetite has a
relationship to their performance and how it evolves over time. We collected
data for ca. 80 companies, from 6 segment
Hi,
I had a similar problem running the 32-bit version of 3.2.0 on Windows 8.1.
For me the problem was user permissions. I re-ran the R program as an
administrator rather than a user and it now installs packages just fine.
Cheers,
Andy
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> On 03 Aug 2015, at 18:00 , Hood, Kyle (CDC/OCOO/OCIO/ITSO) (CTR)
> wrote:
>
> Good afternoon,
>
> I recently received a ticket from a customer to upgrade from 3.1.1. to 3.2.1.
> After the upgrade, when he tries to install a package he receives the error
> below. Could you please advise a
Good afternoon,
I recently received a ticket from a customer to upgrade from 3.1.1. to 3.2.1.
After the upgrade, when he tries to install a package he receives the error
below. Could you please advise as to what is wrong? Thank you.
Kyle
--- Please select a CRAN mirror for use in this sessi
# invoke user defined function
myFunc ( newdata=nmpr_nmproid,
oridata=xanloid_set,
cohort=xanloid_set$cohort_type,
value= "NMPR_Cohort",
xdate_to_int_time=anl_to_int_time,
xflag=xanloid_set$anlflag,
idate=xanloid_set$intdate,
Hello,
I am reposting my question with a reproducible example/minimal dataset (6 rows)
this time.
I have written a user-defined function (myFunc below) with ten arguments. When
calling the function, I get the following message: �Error: wrong result size
(0), expected 2 or 1�.
I am not getting
Hello,
I have written a user-defined function (myFunc below) with ten arguments. When
calling the function, I get the following message: �Error: wrong result size
(816841), expected 52939 or 1�.
myFunc involves a data frame (named xanloid_set), which has 816841 rows. R is
correct to say that I
Such problems usually come from not understanding where files really are,
though sometimes odd file permissions can be the culprit. Understanding how
backslashes work in R strings also sometimes causes problems, though you seem
to be using forward slashes so that may not apply here.
You may fin
Hi,
You don't show us your code, and you really should, but most likely
you did not put the file where you thought you did, or there's a typo
in the name.
Using file.choose() may help.
Also, I think it's bad practice to put user files in the R library
directory. You should make a working directo
Dear R Group,
I have an species occurence file stored in dismo/ex/abc.csv.
When i read the file, it shows error.
Error in file(file, "rt") : cannot open the connection
In addition: Warning message:
In file(file, "rt") : cannot open file
'G:/Software/R-3.1.1/library/dismo/ex/occurence.csv': No suc
I received the same error message. With me, the problem was that I had the
cells in my CSV file in Excel formatted as percentages. R read them as
factors and not as numeric values. After changing the cell format from
percentage to general in Excel, the problem was solved.
--
View this message in
I put header=TRUE and sep = ; and my problem was resolved.
read.csv("./scoreDb.csv",header = TRUE,sep=";"
Best Regards,
Sandro
[[alternative HTML version deleted]]
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On 13.01.2013 15:08, zoe chan wrote:
Dear,
I built the generalized method of moments model to estimate the sales rank
in the bookstore using plm package in R.
The equation is:
data1.gmm <- pgmm(dynformula(lnsales_rank ~ ln_price + avg_ham_rate +
avg_spam_rate + num_of_ham+ num_of_spam + ship
Dear,
I built the generalized method of moments model to estimate the sales rank
in the bookstore using plm package in R.
The equation is:
data1.gmm <- pgmm(dynformula(lnsales_rank ~ ln_price + avg_ham_rate +
avg_spam_rate + num_of_ham+ num_of_spam + ship_code2 +ship_code3
+ship_code4+ ship_co
I'd move this to the R-SIG-Fedora list and, in doing so, give more
info about your install process: built yourself, package manager, etc.
MW
On Wed, Jan 9, 2013 at 7:31 PM, Adam Dahman wrote:
> Hi,
>
> I have installed R on linux using a non root account.
>
> I am getting this error when trying
Hi,
I have installed R on linux using a non root account.
I am getting this error when trying to use it :
./R: error while loading shared libraries: libRblas.so: cannot open shared
object file: No such file or directory
Linux version I am using :
Linux version 2.6.32-131.17.1.el6.x86_64
(m
Hello everybody,
problem solved, there was a typo.
I wrote Type instead of Material
Best
Messaggio originale
Da: angelo.arc...@virgilio.it
Data: 22-giu-2012 11.05
A:
Ogg: Error with glht function: Error in mcp2matrix(model, linfct = linfct) :
Variable(s) 'Type' have been spe
I had the exact same error message, and figured out that the problem was
coming from one of my cell being filled with a "Na" instead of a "NA".
--
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Sent from the R help mailing list archive at Nabbl
Dear R-listers,
I am giving part of my R code :
###
n=15
m=1
library("partitions")
library("gregmisc")
library("combinat")
x = t(restrictedparts(n-m,m))
l = length(x[,1])
for(u in 1:l){
A= unique(matrix( unlist(permn(x[u,])), ncol=m,
Dear R-listers,
I am giving part of my R code :
###
n=15
m=1
library("partitions")
library("gregmisc")
library("combinat")
x = t(restrictedparts(n-m,m))
l = length(x[,1])
for(u in 1:l){
A= unique(matrix( unlist(permn(x[u,])), ncol=m,
; r-help@r-project.org
Subject: Re: [R] R Error: System is computationally singular
Nathan,
This does help, as in the first cut you provided, there was no variability in
LOCS for LCOVER >= 5 and you have very few values of LOCS > 0 (you still do,
relative to the scale of the total).
Ha
On May 24, 2012, at 3:41 PM, Nathan Svoboda wrote:
Re: [R] R Error: System is computationally singular
Hi David,
My apologies, I am not sure if this makes a big difference in your
assessment of the problem, but the results I just sent were only
from a portion (1/15) of the data. The
Nathan,
This does help, as in the first cut you provided, there was no variability in
LOCS for LCOVER >= 5 and you have very few values of LOCS > 0 (you still do,
relative to the scale of the total).
Have you tried using a zero inflated negative binomial model (dist = "negbin")
rather than poi
,
Nate
Nathan Svoboda
Graduate Research Assistant
Mississippi State University
From: David Winsemius [mailto:dwinsem...@comcast.net]
Sent: Thu 5/24/2012 1:54 PM
To: Nathan Svoboda
Cc: r-help@r-project.org
Subject: Re: [R] R Error: System is computationally
Thank you for your quick reply,
When I run the code you provide I get this output:
LCOVER
LOCS 1 2 3 4 5 6 7 9
0 214507 79939 69803 778359 22932 32391 99630 8082
1 15 7 1 32 0 0 0 0
2 2 1
0 0 0 0 0 0
3 0 0 0 1 0 0 0 0
Nate
From: David Winsemius [mailto:dwinsem...@comcast.net]
Sent: Thu 5/24/2012 1:54 PM
To: Nathan Svoboda
Cc: r-help@r-project.org
Subject: Re: [R] R Error
On May 24, 2012, at 1:57 PM, Nathan Svoboda wrote:
Greetings,
I am trying to fit a zero-inflated Poisson model using zeroinfl()
from the
pscl library. I have 5 covariates (4 continuous, 1 categorical); the
categorical variable has 7 levels. I have had success fitting
models that
contain
Greetings,
I am trying to fit a zero-inflated Poisson model using zeroinfl() from the
pscl library. I have 5 covariates (4 continuous, 1 categorical); the
categorical variable has 7 levels. I have had success fitting models that
contain only the continuous covariates; however, when I add the cate
LNadler gmail.com> writes:
>
> Hi there,
>
> I have been having trouble running negative binomial regression (glm.nb)
> using library MASS in R v2.15.0 on Mac OSX.
>
> I am running multiple models on the variables influencing the group size of
> damselfish in coral reefs (count data). For t
Hi there,
I have been having trouble running negative binomial regression (glm.nb)
using library MASS in R v2.15.0 on Mac OSX.
I am running multiple models on the variables influencing the group size of
damselfish in coral reefs (count data). For total group size and two of my
species, glm.nb
Hi all, I had the same problem and I was trying to solve with several ways.
However it was the most simple thing. While I was extracting the file from
Excel to a csv file I was using "," instead of "." inside my numbers (for
example "9,28" instead of "9.28") and each column was seperated with a ";"
Hi,
> The code I have used is
>
>> summary(prefdata)
>> prefdata[prefdata>5]=NA
>> summary(prefdata)
>> prefdata2=as.matrix(prefdata[3:22])
>> stats=paf(prefdata2)
> [1] "One of your variables is a constant. Constants are disallowed as
> part of
could you provide some data / sample data you used fo
Hi,
I'm trying to do an exploratory factor analysis for a uni assignment
but I keep getting this error message coming up
[1] "One of your variables is a constant. Constants are disallowed as
part of a scale."
when I turn the data into a matrix and look at the stats. I've been
told that
>
> On similar lines, how do I assign the position of the an occurence of a
> value say 7 in a data vector to another data vector?
>
> > nFields
> [1] 6 6 6 6 6 6 7 7 6 6 6 7 6 6 6 6
> I need the output data vector showing occurence of 7 as:
> [1] 7 8 12
which(nFields==7)
Regards
Petr
>
On 26-03-2012, at 11:34, Ashish Agarwal wrote:
> On similar lines, how do I assign the position of the an occurence of a
> value say 7 in a data vector to another data vector?
>
>> nFields
> [1] 6 6 6 6 6 6 7 7 6 6 6 7 6 6 6 6
> I need the output data vector showing occurence of 7 as:
> [1] 7 8
On similar lines, how do I assign the position of the an occurence of a
value say 7 in a data vector to another data vector?
> nFields
[1] 6 6 6 6 6 6 7 7 6 6 6 7 6 6 6 6
I need the output data vector showing occurence of 7 as:
[1] 7 8 12
I tried following but both has errors
xFields7 <- NULL
fo
On Mar 25, 2012, at 2:43 PM, ritwi...@isical.ac.in wrote:
Thanks David, your suggestion works fine.btw I have another
question..If I set (n,m) little bit large, say (n=20,m=10), R
cannot
handle the large data frame generated through "expand.grid".Is
there
any way to increase R-m
Thanks David, your suggestion works fine.btw I have another
question..If I set (n,m) little bit large, say (n=20,m=10), R cannot
handle the large data frame generated through "expand.grid".Is there
any way to increase R-memory so that I can tackle large data.frame in R
?
regards
ri
On Mar 23, 2012, at 2:53 AM, ritwi...@isical.ac.in wrote:
Dear Sir/Madam,
I'm getting a problem with a R-code which converts a data frame to a
matrix.
It first generate a (m^(n-m) * m) matrix A and then regenerate another
matrix B having less dimension than A which satisfy some condition.
Hi
See in text.
>
> Dear Sir/Madam,
>
> I'm getting a problem with a R-code which converts a data frame to a
matrix.
>
> It first generate a (m^(n-m) * m) matrix A and then regenerate another
> matrix B having less dimension than A which satisfy some condition. Now
I
> wish to assign each row
Dear Sir/Madam,
I'm getting a problem with a R-code which converts a data frame to a matrix.
It first generate a (m^(n-m) * m) matrix A and then regenerate another
matrix B having less dimension than A which satisfy some condition. Now I
wish to assign each row of B to a vector as individual.
My
You should ask this on R-devel, and tell them exactly what compilers you
used. See the posting guide: this falls under
'Questions likely to prompt discussion unintelligible to non-programmers
should go to to R-devel.'
But yes, it is something to worry about and it looks as if your compiler
Hi,
After building R 2.14.1 on a Linux system (SUSE Linux Enterprise Server
11 (x86_64) ), I ran "make check" but it halted with the foll error:
Testing examples for package âbaseâ
Error: testing 'base' failed
Execution halted
I looked in /test/Examples/base-Ex.Rout.fail and found the foll:
**
On 15.12.2011 16:42, verse123 wrote:
Hi guys,
I am new to R and I am bascially trying to load a library that I installed
and use external data that I have. When trying to use an R package called
cummeRbund (http://compbio.mit.edu/cummeRbund/), I am doing:
library(cummeRbund)
Loading require
Hi guys,
I am new to R and I am bascially trying to load a library that I installed
and use external data that I have. When trying to use an R package called
cummeRbund (http://compbio.mit.edu/cummeRbund/), I am doing:
> library(cummeRbund)
Loading required package: RSQLite
Loading required pack
On 17/11/11 18:54, Sachin Abeywardana wrote:
Hi all,
I was wondering if it was possible to get R to throw an error if a
certain condition was reached. For example:
if dim(A)[2]<=1
error("Need a matrix not a vector")
?stop
cheers,
Rolf Turner
__
Hi all,
I was wondering if it was possible to get R to throw an error if a
certain condition was reached. For example:
if dim(A)[2]<=1
error("Need a matrix not a vector")
thanks,
Sachin
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Hi there ... I see you had this problem last year, hope you solved it ...
I had that same problem over and over again, it was due to my separator was
, but .
it means my keybord was set up on croatian instead of english, now works
normaly ...
cheers
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I've solved the condition problem, but have come across another one with the
gcmrec function and was wondering if anyone could point me in the right
direction again? After running the code below, I get this error message:
Error in gcmrec(Survr(id, time, event) ~ var, data = dataOK, s = 1096) :
N
Sorry for the lack of context - I found a forum (
http://r.789695.n4.nabble.com/R-help-f789696.html) that I thought was easier
to navigate and was using it for the first time. Hit the reply button, but
forgot that the mailing list recipients would not see previous message in
the thread. I've pasted
On Nov 11, 2010, at 2:50 PM, David Winsemius wrote:
On Nov 11, 2010, at 2:09 PM, Emily wrote:
I'm having the same problem
(???: from a three year-old posting for which you didn't copy any
context.)
and was wondering whether you ever found a
solution? It gives me the error "Error in S
On Nov 11, 2010, at 2:09 PM, Emily wrote:
I'm having the same problem
(???: from a three year-old posting for which you didn't copy any
context.)
and was wondering whether you ever found a
solution? It gives me the error "Error in Survr(id, time, event) :
Data
doesn't match. Every sub
I'm having the same problem and was wondering whether you ever found a
solution? It gives me the error "Error in Survr(id, time, event) : Data
doesn't match. Every subject must have a censored time" even though all my
subjects are right-censored, and to be sure, I've even used the addCenTime
funct
Dear Liviu,
in general, pvcm is capable of fitting variable coefficients models on
unbalanced data sets: e.g.,
> data(Grunfeld)
> grun<-Grunfeld[-1,] ## 'unbalance' it
> pvcm(inv~value+capital, data=grun)
Model Formula: inv ~ value + capital
Coefficients:
(Intercept) value capital
1
Euphoria,
Also just consider re-saving the file as a comma separated file (or another
one that fits)
Contact
Details:---
Contact me: tal.gal...@gmail.com | 972-52-7275845
Read me: www.talgalili.com (Hebrew) | www.biostatistics.
On Feb 24, 2010, at 7:07 PM, Euphoria wrote:
Thanks to all who posted. After trying all of the above-listed
options - the
error is still popping up, but here is some progress:
1) I can read in the file just fine when I use the read.table
statement and
specify it as a tab delimited file
Thanks to all who posted. After trying all of the above-listed options - the
error is still popping up, but here is some progress:
1) I can read in the file just fine when I use the read.table statement and
specify it as a tab delimited file using the code:
two <- read.table("Z:/CCFPhenotypesTAB
That makes me wonder, if one could devise a function to check for common
reasons for this error and report them.
What do you think Erik (and other R users) ?
I mean, just going through the R-help list in search of this error - could
yield many common reasons to check for...
Tal
C
I had a comment character "#" in my header names earlier today that
threw this error.
Euphoria wrote:
Hi all! I am desperately trying to figure out the solution to this error, but
nothing as of yet is working.
As noted in an earlier post I am using GenABEL. In an attempt to read in
the phe
From the help page for the read.delim() function, under "See Also", suggests:
'count.fields' can be useful to determine problems with reading
files which result in reports of incorrect record lengths.
This is sometimes helpful.
-Don
At 1:14 PM -0800 2/24/10, Euphoria wrote:
Hi all!
I usually found this problem to be connected to spaces in the column names.
Or, a wrong "sep" argument (for example "," instead of "\t" and the like)
Let us know if it helped.
Cheers,
Tal
Contact
Details:---
Contact me: tal.ga
Hi all! I am desperately trying to figure out the solution to this error, but
nothing as of yet is working.
As noted in an earlier post I am using GenABEL. In an attempt to read in
the phenotype file, in the format .dat, R keeps giving me the error "more
columns than column names"
I have trie
At 12:37 AM -0700 5/11/09, Katie2009 wrote:
hi dieter,
the method i'm using is in excel, copying the data, then in r
w<-read.delim("clipboard")
w<-as.data.frame(w)
i've been doing a bit more fiddling, and have identified the 'class' of the
column that i'm having trouble with, is classifi
hi dieter,
the method i'm using is in excel, copying the data, then in r
> w<-read.delim("clipboard")
> w<-as.data.frame(w)
i've been doing a bit more fiddling, and have identified the 'class' of the
column that i'm having trouble with, is classified as 'factor' whilst the
rest are numeric.
Katie2009 wrote:
>
> hi dieter,
>
> the method i'm using is in excel, copying the data, then in r
>
>> w<-read.delim("clipboard")
>> w<-as.data.frame(w)
>
> i've been doing a bit more fiddling, and have identified the 'class' of
> the column that i'm having trouble with, is classified as '
I'm trying to analyse some excel data in R. The problem is that when i input
the data with the first column as absolute values, everything works fine,
can analyse as normal. When I leave the first column unchanged to import
negative numbers as well I get:
Error in storage.mode(y) <- "double" :
Katie2009 wrote:
>
> I'm trying to analyse some excel data in R. The problem is that when i
> input the data with the first column as absolute values, everything works
> fine, can analyse as normal. When I leave the first column unchanged to
> import negative numbers as well I get:
>
> Error
Dieter Menne wrote:
>
>
>>> Error in S[index] = S[index - 1] + (dSi - dSo - SC) * dt :
>>> nothing to replace with
>>>
>
> Peter Dalgaard wrote:
>> ...that her R version is from before September 2008.
>
> Just curious which item in NEWS this comment refers to. Something changed
> in [] ?
No
>> Error in S[index] = S[index - 1] + (dSi - dSo - SC) * dt :
>> nothing to replace with
>>
Peter Dalgaard wrote:
> ...that her R version is from before September 2008.
Just curious which item in NEWS this comment refers to. Something changed
in [] ?
Dieter
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Rolf Turner wrote:
On 21/11/2008, at 10:13 AM, Steffy, Elizabeth A. wrote:
I got this error for this equation and i'm not sure what it means or
how to fix it:
Error in S[index] = S[index - 1] + (dSi - dSo - SC) * dt :
nothing to replace with
Does anyone know how to fix this?
No.
PL
On 21/11/2008, at 10:13 AM, Steffy, Elizabeth A. wrote:
I got this error for this equation and i'm not sure what it means
or how to fix it:
Error in S[index] = S[index - 1] + (dSi - dSo - SC) * dt :
nothing to replace with
Does anyone know how to fix this?
No.
PLEASE do read th
I got this error for this equation and i'm not sure what it means or how to fix
it:
Error in S[index] = S[index - 1] + (dSi - dSo - SC) * dt :
nothing to replace with
Does anyone know how to fix this?
__
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Would someone be able to help with this question? I'm using the
Gcmrec, Survrec, and Design packages to do a power analysis on
simulated data. I'm receiving an error after using the Survr function
that all data must have a censoring time even after using the gcmrec
function: newdata<-add
Would someone be able to help with this question? I'm using the
Gcmrec, Survrec, and Design packages to do a power analysis on
simulated data. I'm receiving an error after using the Survr function
that all data must have a censoring time even after using the gcmrec
function: newdata<-add
Hi,
I am having a small problem with my code that is preventing my source file
from running. Can anyone identify my error and how to maybe resolve the
issue?
command when error occurs:
modelprobability_genderNB <- naiveBayes(gender ~ ., data =
probability_genderNB)
My error:
Error in tapply(va
Hi
Sometimes also helps to start R from elsewhere, load a package which was
used in analysis and open .Rdata file.
[EMAIL PROTECTED] napsal dne 09.03.2008 17:45:06:
> Yes. I found one that says to change the extension to RData. Where is
the
> folder located? I tried looking at the R folder but
Yes. I found one that says to change the extension to RData. Where is the
folder located? I tried looking at the R folder but couldn't find it.
On 3/9/08, Charilaos Skiadas <[EMAIL PROTECTED]> wrote:
>
> On Mar 9, 2008, at 12:12 PM, Keizer_71 wrote:
>
> >
> > Hi Everyone,
> >
> > I am having troub
On 09/03/2008 12:12 PM, Keizer_71 wrote:
> Hi Everyone,
>
> I am having trouble using R. I am not sure what happen but when i start R, i
> am getting error message
>
> "Fatal Error: Unable to restore saved data in .RData.
>
> -I restarted my pc but still same error
> -I reinstall R but still sa
On Mar 9, 2008, at 12:12 PM, Keizer_71 wrote:
>
> Hi Everyone,
>
> I am having trouble using R. I am not sure what happen but when i
> start R, i
> am getting error message
>
> "Fatal Error: Unable to restore saved data in .RData.
Just google for "unable to restore saved data in .RData. ", and
Hi Everyone,
I am having trouble using R. I am not sure what happen but when i start R, i
am getting error message
"Fatal Error: Unable to restore saved data in .RData.
-I restarted my pc but still same error
-I reinstall R but still same error
-deleted the R folder and have a fresh re-install
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