[R] Skyline plots from several trees in newick format

Dear all, I am trying to create a consensus skyline plot using the ape package(newbie). I have a nexus file that looks like the one from above containing many trees. (my_file.trees) #NEXUS begin trees; [Treefile generated by sim_coal.exe (Laurent Excoffier)] tree true_tree_1 =

Re: [R] Skyline plots from several trees in newick format

Does read.nexus work for you? Bhoom On Sun, Jun 19, 2011 at 5:04 PM, Andra Tolbus andralia.tol...@gmail.comwrote: Dear all, I am trying to create a consensus skyline plot using the ape package(newbie). I have a nexus file that looks like the one from above containing many trees.

Re: [R] Skyline plots from several trees in newick format

No, unfortunately not. It works perfectly fine with other kinds of files. Everything, but these ones...The program that generates them does not have any helpful specifications regarding this format ..*.trees On Mon, Jun 20, 2011 at 5:55 AM, Bhoom [via R]