Re: [R] Survival::coxph (clogit), survConcordance vs. summary(fit) concordance

2016-01-21 Thread Joe Ceradini
Thanks Terry! I thought that since I was providing survConcordance with the model object that the same formula would be applied. But I was obviously wrong. I just ran survConcordance with the addition of the strata argument, as you suggested, and got the same answer as summary(fit)with the sam

Re: [R] Survival::coxph (clogit), survConcordance vs. summary(fit) concordance

2016-01-21 Thread Therneau, Terry M., Ph.D.
I read the digest form which puts me behind, plus the last 2 days have been solid meetings with an external advisory group so I missed the initial query. Three responses. 1. The clogit routine sets the data up properly and then calls a stratified Cox model. If you want the survConcordance ro

Re: [R] Survival::coxph (clogit), survConcordance vs. summary(fit) concordance

2016-01-20 Thread Joe Ceradini
oecerad...@gmail.com] > Sent: Tuesday, January 19, 2016 12:48 PM > To: r-help@r-project.org > Subject: [R] Survival::coxph (clogit), survConcordance vs. summary(fit) > concordance > > Hi, > > I'm running conditional logistic regression with survival::clogit. I have > "1-1 case-c

Re: [R] Survival::coxph (clogit), survConcordance vs. summary(fit) concordance

2016-01-20 Thread Andrews, Chris
er(site), method ="efron", data = dat) # no warning summary(fit) Chris -Original Message- From: Joe Ceradini [mailto:joecerad...@gmail.com] Sent: Tuesday, January 19, 2016 12:48 PM To: r-help@r-project.org Subject: [R] Survival::coxph (clogit), survConcordance vs. summary(fit)

[R] Survival::coxph (clogit), survConcordance vs. summary(fit) concordance

2016-01-19 Thread Joe Ceradini
Hi, I'm running conditional logistic regression with survival::clogit. I have "1-1 case-control" data, i.e., there is 1 case and 1 control in each strata. Model: fit <- clogit(resp ~ x1 + x2, strata(ID), cluster(site), method ="efron", data = dat) Where resp is 1's and 0's, and x1 and x2 are both