It looks like it is not a UTF-16 text file, although it could be UTF-16
with a different byte order.
Look at it with a text editor or Excel or 'od' or 'file' (the latter are
Unix utilities) or ask the person
you got it from to see what the file contains.
Bill Dunlap
TIBCO Software
wdunlap
Try adding fileEncoding="UTF-16" to your read.csv() call. Many Windows
programs write UTF-16 files by default.
Bill Dunlap
TIBCO Software
wdunlap tibco.com
On Thu, Aug 30, 2018 at 6:05 PM, Spencer Brackett <
spbracket...@saintjosephhs.com> wrote:
> My apologies... the following is what I
At this point, it seems pretty clear that the issue is in the data file itself.
Possibilities are that it is either not a CSV file to begin with or in some
exotic encoding (utf-16?).
You probably need to look at the file in a text editor to see whether the
context makes sense as
My apologies... the following is what I received from the correction
the_data<-read.csv(file="GBM_clinical_drug.csv",header=TRUE,sep=",")
Warning messages:
1: In read.table(file = file, header = header, sep = sep, quote = quote, :
line 3 appears to contain embedded nulls
2: In read.table(file
Hello again,
My apologies for the delayed response... computer troubles. In reference to
Ms. Goslee's and Mr. Barry's query, the following is the error code
received after I inputted my R command
the_data<-read.csv(file="GBM_clinical_drug.csv",header=TRUE,sep",")
Error: unexpected string
On Wed, Aug 29, 2018 at 6:58 PM Spencer Brackett
wrote:
>
> Thank you! The line however was still found to be errored after I fixed the
> mistake. Is there anything else I can do to maybe set the “.” As an object?
But presumably with a different error, which you don't tell us.
The "."
As an aside, the sep = "," can be omitted, as that's the default anyway.
In his response to Sarah, the OP gave us only "the line was found to be
errored," which of course is useless. Perhaps if he provided explicit
information on what the call and the error was...
-- Bert
On Wed, Aug 29, 2018
Thank you! The line however was still found to be errored after I fixed
the mistake. Is there anything else I can do to maybe set the “.” As an
object?
Spencer
On Wed, Aug 29, 2018 at 6:34 PM Sarah Goslee wrote:
> Hi,
>
> If you had an actual gene analysis question I'd suggest the
>
Hi,
If you had an actual gene analysis question I'd suggest the
BioConductor email list, but you have a plain old ordinary typo:
the_data <-read.csv(file="LGG_clinical_drug.csv",header=T,sep",")
You're missing the = after the argument sep
the_data <- read.csv(file = "LGG_clinical_drug.csv",
Good evening R users,
I am attempting to carry out DNA methylation analysis on two separate CSV
files (LGG and GBM), which I have downloaded onto my R console. To set the
path<-"." to be indicative of one or both of the csv files, I utilized the
following functions and received the errors
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