This is not really addressing your problem, but I thought you might want to
know that the rtracklayer package in Bioconductor already supports parsing
BED files, as well as GFF and WIG. It's main purpose is to load the tracks
into genome browsers, like UCSC.
Michael
On Wed, May 28, 2008 at 1:11 A
From the NEWS file for R-patched:
o A field containing just a sign is no longer regarded as numeric
(it was on all platforms in 2.7.0, but not on most in earlier
versions of R).
So the default behaviour has already been changed. The right way to
overcome this was (as you
Great R people,
I have noticed a strange behaviour in read.delim() and friends in the R
2.7.0 version. I will describe you the problem and also the solution I
already found, just to be sure it is an expected behaviour and also to
tell people, who may experience the same difficulty, a way to ov
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