[R] biclust package

2010-09-01 Thread James Nead
Hi, I wanted to compare the quality of biclusters obtained from the various biclustering algorithms. Is there a function/metric in biclust (or some other package) that will enable me to do this? thanks! [[alternative HTML version deleted]]

Re: [R] biclust package

2010-02-26 Thread Martin Maechler
> "UweL" == Uwe Ligges > on Fri, 26 Feb 2010 17:24:43 +0100 writes: UweL> On 26.02.2010 17:04, linda garcia wrote: >> Dear all, >> I am using biclust package for biclustering. I wanted to >> know how can I extract my clusters from the object? >> >> >> lib

Re: [R] biclust package

2010-02-26 Thread Uwe Ligges
On 26.02.2010 17:04, linda garcia wrote: Dear all, I am using biclust package for biclustering. I wanted to know how can I extract my clusters from the object? library(biclust) test<- matrix(rnorm(5000), 100, 50) test[11:20,11:20]<- rnorm(100, 3, 0.1) loma<- binarize(test,

[R] biclust package

2010-02-26 Thread linda garcia
Dear all, I am using biclust package for biclustering. I wanted to know how can I extract my clusters from the object? library(biclust) test <- matrix(rnorm(5000), 100, 50) test[11:20,11:20] <- rnorm(100, 3, 0.1) loma <- binarize(test,2) res <- biclust(x=loma, method=BCBimax()

[R] Biclust package: drawHeatmap()

2010-02-01 Thread Tim Smith
Hi, I was trying to draw a heatmap of the bicluster results. With the code given in the biclust package I can only get the heatmap for one cluster at a time (drawHeatmap function). Is there any way that I can get the heatmap for all the clusters at the same time? The code that I am using (biclu