Re: [R] fisher exact for > 2x2 table

2011-04-29 Thread Jeremy Miles
On 29 April 2011 08:43, viostorm wrote: > > After I shared comments form the forum yesterday with the biostatistician he > indicated this: > > "Fisher's exact test is the non-parametric analog for the Chi-square > test for 2x2 comparisons. A version (or extension) of the Fisher's Exact > test, kno

Re: [R] fisher exact for > 2x2 table

2011-04-29 Thread Mike Miller
Rob-- Your biostatistician has not disagreed with the rest of us about anything except for his preferred name for the test. He wants to call it the Freeman-Halton test, some people call it the Fisher-Freeman-Halton test, but most people call it the Fisher Exact test -- all are the same test.

Re: [R] fisher exact for > 2x2 table

2011-04-29 Thread Brian S Cade
tel: 970 226-9326 From: viostorm To: r-help@r-project.org Date: 04/29/2011 01:23 PM Subject: Re: [R] fisher exact for > 2x2 table Sent by: r-help-boun...@r-project.org After I shared comments form the forum yesterday with the biostatistician he indicated this: "Fisher's exact tes

Re: [R] fisher exact for > 2x2 table

2011-04-29 Thread viostorm
After I shared comments form the forum yesterday with the biostatistician he indicated this: "Fisher's exact test is the non-parametric analog for the Chi-square test for 2x2 comparisons. A version (or extension) of the Fisher's Exact test, known as the Freeman-Halton test applies to comparison

Re: [R] fisher exact for > 2x2 table

2011-04-28 Thread viostorm
Thank you all very kindly for your help. -Rob Robert Schutt III, MD, MCS Resident - Department of Internal Medicine University of Virginia, Charlottesville, Virginia -- View this message in context: http://r.789695.n4.nabble.com/fisher-exact-for-2x2-table-tp

Re: [R] fisher exact for > 2x2 table

2011-04-28 Thread Mike Miller
On Thu, 28 Apr 2011, viostorm wrote: I have read the help page, or at least ?fisher.exact I looked a bit on the Internet I guess it is applicable to > 2x2. I had spoken to a biostatistician here who is quite excellent and was adamant with me I could not do > 2x2. I found this: http://math

Re: [R] fisher exact for > 2x2 table

2011-04-28 Thread Mike Miller
On Fri, 29 Apr 2011, Thomas Lumley wrote: On Fri, Apr 29, 2011 at 8:01 AM, Mike Miller wrote: On Thu, 28 Apr 2011, viostorm wrote: I'm using fisher.exact on a 4x2 table and it seems to work. Does anyone know exactly what is going on?  I thought fisher.exact is only for 2x2 tables. You

Re: [R] fisher exact for > 2x2 table

2011-04-28 Thread David Winsemius
On Apr 28, 2011, at 4:23 PM, viostorm wrote: I have read the help page, or at least ?fisher.exact Then it should have been clear that more than 2x2 tables can be used. I looked a bit on the Internet I guess it is applicable to > 2x2. I had spoken to a biostatistician here who is quite

Re: [R] fisher exact for > 2x2 table

2011-04-28 Thread viostorm
I have read the help page, or at least ?fisher.exact I looked a bit on the Internet I guess it is applicable to > 2x2. I had spoken to a biostatistician here who is quite excellent and was adamant with me I could not do > 2x2. I found this: http://mathworld.wolfram.com/FishersExactTest.html D

Re: [R] fisher exact for > 2x2 table

2011-04-28 Thread Thomas Lumley
On Fri, Apr 29, 2011 at 8:01 AM, Mike Miller wrote: > On Thu, 28 Apr 2011, viostorm wrote: > >> I'm using fisher.exact on a 4x2 table and it seems to work. >> >> Does anyone know exactly what is going on?  I thought fisher.exact is only >> for 2x2 tables. > > > You were wrong.  I'm sure there's no

Re: [R] fisher exact for > 2x2 table

2011-04-28 Thread David Winsemius
On Apr 28, 2011, at 3:45 PM, viostorm wrote: I'm using fisher.exact on a 4x2 table and it seems to work. Does anyone know exactly what is going on? I thought fisher.exact is only for 2x2 tables. Have you read the help page? -- David Winsemius, MD West Hartford, CT ___

Re: [R] fisher exact for > 2x2 table

2011-04-28 Thread Mike Miller
On Thu, 28 Apr 2011, viostorm wrote: I'm using fisher.exact on a 4x2 table and it seems to work. Does anyone know exactly what is going on? I thought fisher.exact is only for 2x2 tables. You were wrong. I'm sure there's nothing wrong with the program. You will find that with bigger tabl

[R] fisher exact for > 2x2 table

2011-04-28 Thread viostorm
I'm using fisher.exact on a 4x2 table and it seems to work. Does anyone know exactly what is going on? I thought fisher.exact is only for 2x2 tables. Note: I can't use chi-squared because I have a couple of cells with 0 and < 5 observations. -- View this message in context: http://r.789695