Did you download the new package and check? Is there some reason you
shouldn't do this in any case?
There is also usually a News file in the package download that tells you
about new features.
-- Bert
Bert Gunter
"The trouble with having an open mind is that people keep coming along and
stick
hi, check out the news page..
https://cran.r-project.org/web/packages/survey/NEWS
On Tue, Jun 19, 2018 at 5:54 PM, Mackenzie Jones
wrote:
> Dear R Users,
>
> I want to use a multinomial logistic regression model with survey data in
> the “survey” package. The original package did not have a func
Dear R Users,
I want to use a multinomial logistic regression model with survey data in the
“survey” package. The original package did not have a function for multinomial
logistic regression, so Thomas Lumley suggested creating replicate weights for
the survey and doing a multinomial regression
Hi Dear Rusers,
I am working on a survey data with the "survey" package. The logistic
regression and multinomial regression would be the main statistic method I
want to use. I found that the svyglm function could be used to conduct the
logistic regression with the complex design but not the mul
Dear r-helpers,
I want to run a multinomial mixed effects model with the glmmADMB package
of R. I have read the available information of the programm but i couldn't
find which family or link has to be used for multinomial data. In the
examples are only shown models with Poisson, negative binomial
On Mon, 14 Sep 2015, Iker Vaquero Alba wrote:
I have some data I would like to analyse where my response variables
are categorical data: several participants were asked to give answers in
the form of 1 to 5 (for the degree of importance given to certain items).
So, what I have now is response
Hello everyone,
I have some data I would like to analyse where my response variables are
categorical data: several participants were asked to give answers in the form
of 1 to 5 (for the degree of importance given to certain items). So, what I
have now is response variables that can just t
mixtools package has mixture of Gaussian fitting, maybe that might help?
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PLEASE do read the posting guide http://www.R-project.org/posting-g
Dear all,I am trying to fit a heavy tailed distribution and I have tried
working with the mix function of the mixdist package.It looks like that this
package allows fitting two distributions (or move) of the same family and not
combining different distributions (so mixing a geometric with a nor
Reproducible example???
cheers,
Rolf Turner
P.S. Where does "mlogit" come from? Note fortune(182).
R. T.
On 31/03/15 06:46, Ingrid Charvet wrote:
Hello,
When fitting a logit multinomial model with "mlogit" I can retrieve
the response probabilities using fit$fitted.values (for a given
ob
Hello,
When fitting a logit multinomial model with "mlogit" I can retrieve the
response probabilities using
fit$fitted.values (for a given object "fit")
However, I am trying to calculate those response probabilities myself using the
maximum likelihood estimates (i.e. fit$coefficients) given by
I discovered the 'mlogit'-package for multinomial logit models in search of
estimating a multinomial mixed logit model. After reading the excellent
vignette I discovered that I could not apply my data on any of the
described examples.
I now write in hope of help with my problem and created a minim
My aim is to estimate a multinomial model with some endogenous variables.
I tried the control function approach but the results are rather bad.
I am thinking to ML estimation. Is there a package I can use to estimate
this model?
Thanks a lot
Erasmo Papagni
Department of economics
Universit
Hi R-users,
Does anyone know of a package in R that could be used to implement a
multinomial regression model accounting for repeated measures?
Thanks.
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On Jul 2, 2013, at 21:21 , Luciano La Sala wrote:
> Hello everyone,
>
> I have a dataset which consists of "Pathology scores" (Absent, Mild, Severe)
> as outcome variable, and two main effects: Age (two factors: twenty / thirty
> days old) and Treatment Group (four factors: infected without ATB
Hi Luciano
There are a number of types of ordinal regression and you need to be
specific about that.
There are a number of ordinal packages to do ordinal regression.
MASS::polr
arm::bayespolr
ordinal
VGAM
repolr
geepack
etc
Each of them has specific requirements about coding of the variables
Hello everyone,
I have a dataset which consists of "Pathology scores" (Absent, Mild, Severe)
as outcome variable, and two main effects: Age (two factors: twenty / thirty
days old) and Treatment Group (four factors: infected without ATB; infected
+ ATB1; infected + ATB2; infected + ATB3).
First I
Have a look at Brian Ripleys polr in library(MASS) and multinom in
the library(nnet)
There are other packages as well so a search will give you more choices
Be careful to read the help pages carefully and make sure that you
know what you are testing.
HTH
Duncan
Duncan Mackay
Department of
Is it possible to use function "glm" in case when my outcome variable has 5
different classes? I have seen examples only when using binomial outcome
variable.
What about using function "multinom"? How do I to get the signifigance and
the confidence levels of the coefficients and the value of goo
On May 13, 2013, at 9:08 AM, Anamika Chaudhuri wrote:
> Hi David:
>
> My main goal is to be able to find the method/model that estimates the random
> effect of site on multiple binomial outcomes in multicenter clinical trial
> settings. The methods you have suggested are fixed effects models,
Hi David:
My main goal is to be able to find the method/model that estimates the
random effect of site on multiple binomial outcomes in multicenter clinical
trial settings. The methods you have suggested are fixed effects models,
right?
Thanks
Anamika
On Sun, May 12, 2013 at 9:44 PM, David Winse
On May 12, 2013, at 4:44 PM, Anamika Chaudhuri wrote:
> Hi:
>
> I have asked this question on Cross-Validated. So it might be a cross
> posting but havent received any responses to it.
>
> I am trying to see which distribution will best fit the data I am working
> on. The dataset is as followin
Hi:
I have asked this question on Cross-Validated. So it might be a cross
posting but havent received any responses to it.
I am trying to see which distribution will best fit the data I am working
on. The dataset is as following:
Site Nausea headacheAbdominal Distension
Thanks for the answers to my previous post,
I hope I am posting on the correct list now.
I managed so far to run the multinomial model with random effect with
the following command:
MCMCglmm(fixed=cbind(Apsy,Mygl,Crle,Crru,Miag,empty) ~
habitat:trait,random=~idh(trait):mesh,family="multinomia
Thanks for your answers Stephen and Ben,
I hope I am posting on the correct list now.
I managed so far to run the multinomial model with random effect with the
following command:
MCMCglmm(fixed=cbind(Apsy,Mygl,Crle,Crru,Miag,empty) ~
habitat:trait,random=~idh(trait):mesh,family="multinomial12",
Dear all,
I would like to add mixed effects in a multinomial model and I am trying
to use MCMCglmm for that.
The main problem I face: my data set is a trapping data set, where the
observation at each trap (1 or 0 for several species) have been
aggregated per trapline (i.e. 25 traps). Therefore we
Vaniscotte gmail.com> writes:
>
> Dear all,
>
> I would like to add mixed effects in a multinomial model and I am trying
> to use MCMCglmm for that.
[snip]
> > "ill-conditioned G/R structure: use proper priors if you haven't or
> rescale data if you have"
>
> I guess that the problem com
Dear all,
I would like to add mixed effects in a multinomial model and I am trying
to use MCMCglmm for that.
The main problem I face: my data set is a trapping data set, where the
observation at each trap (1 or 0 for several species) have been
aggregated per trapline (i.e. 25 traps). Therefore w
Dear all,
I would like to add mixed effects in a multinomial model and I am trying
to use MCMCglmm for that.
The main problem I face: my data set is a trapping data set, where the
observation at each trap (1 or 0 for several species) have been
aggregated per trapline (i.e. 25 traps). Therefore w
Dear all,
I would like to add mixed effects in a multinomial model and I am trying
to use MCMCglmm for that.
The main problem I face: my data set is a trapping data set, where the
observation at each trap (1 or 0 for several species) have been
aggregated per trapline (i.e. 25 traps). Therefore w
Dear all,
I would like to add mixed effects in a multinomial model and I am trying
to use MCMCglmm for that.
The main problem I face: my data set is a trapping data set, where the
observation at each trap (1 or 0 for several species) have been
aggregated per trapline (i.e. 25 traps). Therefore w
Dear all,
I would like to add mixed effects in a multinomial model and I am trying to
use MCMCglmm for that.
The main problem I face: my data set is a trapping data set, where the
observation at each trap (1 or 0 for different species) have been
aggregated per traplines (i.e sum over 25 traps). T
Dear all,
I would like to add mixed effects in a multinomial model and I am trying
to use MCMCglmm for that.
The main problem I face: my data set consits of a trapping data set,
where the observation at eah trap (1 or 0 for each species) have been
aggregated per traplines. Therefore we have
Dear all,
I would like to add mixed effects in a multinomial model and I am trying
to use MCMCglmm for that.
The main problem I face: my data set consits of a trapping data set,
where the observation at eah trap (1 or 0 for each species) have been
aggregated per traplines. Therefore we have
Dear all,
I would like to add mixed effects in a multinomial model and I am trying
to use MCMCglmm for that.
The main problem I face: my data set consits of a trapping data set,
where the observation at eah trap (1 or 0 for each species) have been
aggregated per traplines. Therefore we have
Dear all,
I am having a hard time attempting to do a multinomial logit modeling in R.
I am trying to analyze a dataset whereby there are 3 scenarios with 4
difference choice parameters. In particular – I am having a hard time
arranging this into a .csv format. What sorts of headings should I pu
Dear all,
I am having a hard time attempting to do a multinomial logit modeling in R.
I am trying to analyze a dataset whereby there are 3 scenarios with 4
difference choice parameters. In particular – I am having a hard time
arranging this into a .csv format. What sorts of headings should I pu
I suggest a couple of courses before proceeding. Multinomial logistic models
have special challenges. And note that you have two nomenclature errors in
your note, which is usually a sign of not having taken the relevant
coursework.
Frank
Belle wrote:
>
> Does anyone know how to run Multinomial
On May 24, 2011; 11:06pm Belle wrote:
> Does anyone know how to run Multinomial logistical Model in R in order to
> get predicted probability?
Yes. I could stop there but you shouldn't. The author of the package
provides plenty of examples (and two good vignettes) showing you how to do
this. Sugg
Hi,
Consider the need for a regression model which can handle an ordered
multinomial response variable. There are, for example, proportional odds
/ cumulative logit models, but actually the regression should include
random effects (a mixed model), and I would not be aware of multinomial
regr
Hi
Thanks to Jeremy for his response...
I have been able to generate the factors and generate mlogit data using his
code:
mldata<-mlogit.data(mydata, varying=NULL, choice="pitch_type_1",
shape="wide")
my mlogit data looks like:
"dependent_var","A variable","B Var","chid","alt"
FALSE,"110","19
If you are just looking to collapse the dummy variables into two factor
variables, the following will work.
## Generate some example data
set.seed(1234)
n <- 100
# Generate outcome
outcome <- rbinom(n, 3, 0.5)
colnames(exposures) <- paste("V", seq(1:10), sep = "")
#Generate dummy variables for A
Hi All,
I am attempting to build a Multinomial Logit model with dummy variables of
the following form:
Dependent Variable : 0-8 Discrete Choices
Dummy Variable 1: 965 dummy varsgh...@student.monash.edu.augh@gp1.com
Dummy Variable 2: 805 dummy vars
The data set I am using has the dummy columns p
Hi all,
Does anyone knows how to handle ordered preferences applying the R
package mlogit (multinomial logit model)? My data set provides for each
customer preferences (given as percentages) for 6 different brands. I
would like to use for model calibration not just that brand with
maximum stated
I want to analyse data with an unordered, multi-level outcome variable, y. I am
asking for the appropriate method (or R procedure) to use for this analysis.
> N <- 500
> set.seed(1234)
> data0 <- data.frame(y = as.factor(sample(LETTERS[1:3], N, repl = T,
+ prob = c(10, 12, 14))), x1 = sample
Hello,
I would like to estimate the parameters of multinomial GLMMs by maximum
likelihood. Or at least, I would like to compute the likelihood of a given
set of parameters.
In the case of multinomial GLMs (i.e. with discrete nominal response
variable), I would use a command like
> library(VG
I would take a look at mlogit() in package mlogit or vglm() with
family = multinomial in package VGAM.
HTH,
Josh
2010/7/16 Rosario Austral :
> Dear R-list members,
> I´m using the package "survey" and I need to find a function for
> multinomial logistic regression in a complex design. The functi
Dear R-list members,
I´m using the package "survey" and I need to find a function for
multinomial logistic regression in a complex design. The functions that
I see are only for dicotomic and ordinal variables.
Thank you!
Rosario Austral
De: "r-help-requ...@r-
Hi
I carried out multinomial logistic reg. in R by package 'nnet'.
response variable has 7 level and predictors (4 variable) are classifier and
continuous.
I want to present results as figur but I can't. also, I read R example but I
have cell grid and I can't define data.frame.
please help me
I am developing a multinomial regression model with the function multinom.
The dependent variable is qualitative with three possible outcomes, the
independent variables are all quantitative.
I want to check the significance of predictor variables, which function I
use to run the correct test? You a
Hi,
I'd like to do a multinomial glm with nested and random Effects
The "multinom" function from (nnet) give me this:
> multinom(mc$c ~ (1|mc$date)+mc$lma + mc$poid+(mc$pop) +mc$male %in%
> mc$pop,family="multinomial" )
# weights: 60 (44 variable)
I would add that I followed explanations from the following URL (UCLA):
http://www.ats.ucla.edu/stat/r/dae/mlogit.htm
I still don't know how the probabilities are generated from the coefficients
and intercepts...
Anybody ?
Thanks.
OLIVIER REGNIER-COUDERT (0509785) wrote:
>
> Dear all,
>
>
Dear all,
I am new to R and would like to run a multinomial logistic regression on my
dataset (3 predictors for 1 dependent variables)
I have used the vglm function from the VGAM package and got some results. Using
the predict() function, I obtained the probability table I was looking for.
Ho
Dear all,
I have a problem for multinomial logistic regression: the response
variable is multinomial (score 1-5) and the two predictors are
categorical; all that comes from panelists (it's a kind of preference
study), which I treat as a block and include in the model (is it
correct?). I would like
Hi, i'm an italian student that use for the first time the mailing list. I need
an help to use a function for elaborate a multinomial logit analisys. I'm
making a paper on the USA's commons and their way of organize their service.
The various tipologies of service are 4: public, contracting in
I'm attempting to creat multinomial logistic regression model using the
following code:
mlogit<- vglm(ME ~ HIST,family=multinomial(),na.action = na.pass)
ME (dependent variable) has three levels (0,1,2)
How do I declare a reference outcome (either 0,1,2)?
Dear:
I try to analysis multinomial logistic regression using vglm in VGAM package.
However, I wonder how many levels of responses variable this command is
suitable. I saw the examples in google search works for 3 levels, say 1,2,3.
However, my response variable is more than 3 levels. Is it
y, September 01, 2008 6:31 PM
> To: r-help@r-project.org
> Subject: [R] multinomial estimation output stat question -
> not R question
>
> I am estimating a multinomial model with two quantitative
> predictors, X1 and X2, and 3 responses. The responses are
> called neutral, positive
I am estimating a multinomial model with two quantitative predictors, X1
and X2, and 3 responses. The responses are called neutral, positive and
negative with neutral being the baseline. There are actually many models
being estimated because I estimate the model over time and also for
various
Hi all,
I have a set of data which looks similar to this (only way bigger!)
linktyperegister
F D a
E D b
R D c
A T d
D T a
F D b
. . .
. . .
and would like to
The function in package nnet for 'Multinomial Logit Regression' is called
multinom() and not nnet(). You seem not to have used it, and therein lies
your error.
If you need more help, multinom() is support software for a book (see
library(help=nnet)), and the book has extensive worked examples.
> Hi again. I believe that I described the things bad before.
>
> I want to make the analysis with a sample data (train.set) of dataset for
> later see if the predictions adjust to the rest of data non selected with
> the sample train.
>
> Then, of the same form in glm:
>
> library(nnet)
> net <-
Hi again. I believe that I described the things bad before.
I want to make the analysis with a sample data (train.set) of dataset for
later see if the predictions adjust to the rest of data non selected with
the sample train.
Then, of the same form in glm:
library(nnet)
net <- nnet(response.
Hi all,
I have a dataset with a response variable with three categories (1, 2, 3)
and a lot of continuous variables. I'd like to make a MLR with these
variables. I've been watching the libraries nnet and zelig for this purpose
but I don't understand them well.
I use a training sample data to ma
Hi R users!
Is there a function that extracts the simultaneous confidence intervals for
multinomial proportions as described by Sison and Glaz 1995? or anyone else for
that matter?
I have seen that SAS has macro for this ( http://www.jstatsoft.org/v05/i06)
and i was wondering if R had somet
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