Maybe the pedigree is not set up correctly. If this is the case, the
kinship matrix will not be constructed correctly. I see that in this
example,
the diagonal terms differ.
diag(kmat)
lmekin runs fine for me, and I can extract p-values with:
lmekinfit - lmekin(...)
pval -
I am making the question clear. Please help.
Dear R experts
I was using kinship package to fit mixed model with kinship matrix.
The package looks like lme4, but I could find a way to extract p-value
out of it. I need to extract is as I need to analyse large number of
variables ( 1).
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