dear William ,
I have an issue with R code which is :
FCP<-as.matrix(sapply(FCPval,as.numeric))
for (i in 1:rowN){if (FCP$FC[i] >= 1.5 & FCP$FC[i]<=-1.5 & FCP$p[i]<=0.05){
dfrmPFC=data.frame(matrix(Fc=FC,p=p))}
}
the error is :Error in FCP$FC : $ operator is invalid for atomic vectors
could you
also the header =0
On Wed, Sep 2, 2015 at 11:52 PM, Shawin Karim wrote:
> make row.name=0 instead to 1
>
> On Wed, Sep 2, 2015 at 11:07 PM, Bogdan Tanasa [via R] <
> ml-node+s789695n4711774...@n4.nabble.com> wrote:
>
>> Dear all,
>>
>> would appreciate a piece of help with a simple question: I a
that is great, thank you Bill for time and help ;) !
On Wed, Sep 2, 2015 at 4:36 PM, William Dunlap wrote:
> y <- as.matrix(read.table("FILE_NAME",header=T,row.names=1))
> colnames(y) <- gsub("X","", colnames(y))
>
> Use read.table's check.names=FALSE argument so it won't mangle
> the column
y <- as.matrix(read.table("FILE_NAME",header=T,row.names=1))
colnames(y) <- gsub("X","", colnames(y))
Use read.table's check.names=FALSE argument so it won't mangle
the column names instead of trying to demangle them with gsub() afterwards.
E.g.,
txt <- " 50% 100%\nA 5 8\nB 13
Thanks, Bert ! I solved the situation in the meanwhile, by using :
y <- as.matrix(read.table("FILE_NAME",header=T,row.names=1))
colnames(y) <- gsub("X","", colnames(y))
On Wed, Sep 2, 2015 at 3:59 PM, Bert Gunter wrote:
> Please read the Help file carefully before posting:
>
> "read.table is
Please read the Help file carefully before posting:
"read.table is not the right tool for reading large matrices,
especially those with many columns: it is designed to read data frames
which may have columns of very different classes. Use scan instead for
matrices."
But the answer to your questio
Dear all,
would appreciate a piece of help with a simple question: I am reading in R
a file that is formatted as a matrix (an example is shown below, although
it is more complex, a matrix of 1000 * 1000 ):
the names of the columns are 0, 1, 4, 8, etc
the names of the rows are 0, 1
#2 A_hubs_B_hubs 0.1388408
> #3A_hubs_B_nonhubs 0.1531984
> #4A_nonhubs_B_hubs 0.7910863
> #5 A_nonhubs_B_nonhubs 0.4926012
> #6B_hubs_B_nonhubs 0.6350055
>
> A.K.
>
>
>
> - Original Message -
> From: anupam sinha
> To: r-help@r-project.o
NAME P_value
#1 A_hubs_A_nonhubs 0.3684845
#2 A_hubs_B_hubs 0.1388408
#3 A_hubs_B_nonhubs 0.1531984
#4 A_nonhubs_B_hubs 0.7910863
#5 A_nonhubs_B_nonhubs 0.4926012
#6 B_hubs_B_nonhubs 0.6350055
A.K.
- Original Message -
From: anupam sinha
To: r-help@r-proj
Dear all,
I need help with some coding. I have a directory with files like these:
A_hubs
A_nonhubs
B_hubs
B_nonhubs
:
:
Each of these files have the following header and content:
GENE TIS_DEG TOT_SVTIS_SVTIS_DISO
ensg1 20 12 4 40
.
.
and so on..
Hi Hth -- Gerrit ,
thanks for reply
sorry it was typo mistake , but I corrected that problem before . But the
error is still same.
setwd("/Groups/data_first/")
file_was <- list.files(path = ".", pattern = "v2.0.2.was", all.files =
FALSE, full.names = FALSE, recursive = FALSE, ignore.case =
Hi Hth -- Gerrit ,
I found the problem
I added "sep" and one bracket was missing
the new codes are as follows
setwd("/Groups/data_first/")
file_was <- list.files(path = ".", pattern = "v2.0.2.was", all.files =
FALSE, full.names = FALSE, recursive = FALSE, ignore.case = FALSE)
path<-c("
Hi,
On 03/28/2012 08:48 AM, uday wrote:
> I would like to read data from two different folder and then combine this
> together
> the code which I have tried are as follows
> setwd("/Groups/data_first/")
> file_was <- list.files(path = ".", pattern = "v2.0.2.was", all.files =
> FALSE, full.names
Hello, uday,
there's presumably a typo in your code because you use path1t in
data2 <- read.table(paste(path1t, file_wasaux2[i],header=TRUE))
and not path which you defined above.
Hth -- Gerrit
-
Dr. Gerrit Eichner
I would like to read data from two different folder and then combine this
together
the code which I have tried are as follows
setwd("/Groups/data_first/")
file_was <- list.files(path = ".", pattern = "v2.0.2.was", all.files =
FALSE, full.names = FALSE, recursive = FALSE, ignore.case = FALSE)
path
- Original Message
From: Uwe Ligges
To: Tim Clark
Cc: r-help@r-project.org
Sent: Sun, July 18, 2010 6:03:47 AM
Subject: Re: [R] Reading files with varying number of columns
See argument "fill" in ?read.table
Uwe Ligges
On 18.07.2010 12:14, Tim Clark wrote:
> De
See argument "fill" in ?read.table
Uwe Ligges
On 18.07.2010 12:14, Tim Clark wrote:
Dear R list,
I am trying to read files with a varying number of columns and can't figure out
how to get them in the proper format. Some rows have five value and some have
seven. Is there a way to read them in
Dear R list,
I am trying to read files with a varying number of columns and can't figure out
how to get them in the proper format. Some rows have five value and some have
seven. Is there a way to read them in so that two empty columns are added to
every row that has only five values? An examp
On Apr 25, 2009, at 2:46 AM, Santosh wrote:
Dear R-sians
Quick question...
1) From a flat (data) file with 100+ columns, how do I read specific
columns
instead of reading the entire dataset? I am trying to avoid reading
the
entire file followed by "subsetting".
If you are asking about h
On Sat, Apr 25, 2009 at 2:46 AM, Santosh wrote:
> Dear R-sians
> Quick question...
>
> 1) From a flat (data) file with 100+ columns, how do I read specific columns
> instead of reading the entire dataset? I am trying to avoid reading the
> entire file followed by "subsetting".
In read.table you c
Dear R-sians
Quick question...
1) From a flat (data) file with 100+ columns, how do I read specific columns
instead of reading the entire dataset? I am trying to avoid reading the
entire file followed by "subsetting".
2) is the a way to a call a column of dataframe through a variable.. e.g.
e,g
I'm forwarding to this list as I've got no
answer in [R-sig-Geo] and perhaps this
issue is not exclusive of readOGR()
I'm using ubuntu 8.04 andR version 2.8.0 (2008-10-20)
Original Message
Subject: readOGR and non-ascii characters
Date: Wed, 03 Dec 2008 14:22:34 +0100
From: Ag
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