Re: [R] update.packages() after updating R version [RESOLVED]

2018-05-27 Thread Rich Shepard
On Sat, 26 May 2018, Duncan Murdoch wrote: I think you want update.packages(ask = FALSE, checkBuilt = TRUE) to automatically update all packages and their dependencies. With the default checkBuilt=FALSE, R just sees whether a dependency is a high enough version number. But packages installed und

Re: [R] update.packages() after updating R version

2018-05-26 Thread Duncan Murdoch
On 26/05/2018 7:24 PM, Rich Shepard wrote: R-3.5.0 is installed here. When I tried to update installed packages errors were reported when their dependencies were built under a prior version of R. Reading ?update.packages() I did not see an option that would automatically update dependenc

Re: [R] update.packages() after updating R version

2018-05-26 Thread Rich Shepard
On Sat, 26 May 2018, Bert Gunter wrote: Is this warning in ?update.packages relevant? Bert, Short answer: no. I have only a single R library here: /usr/lib/R/library. I've tried 'install.packages("", dependencies = TRUE) and still need to follow the dependencies chain down, re-install

Re: [R] update.packages() after updating R version

2018-05-26 Thread Bert Gunter
Is this warning in ?update.packages relevant? "Take care when using dependencies (passed to install.packages ) with update.packages, for it is unclear where new dependencies should be installed. The current implementation will only a

[R] update.packages() after updating R version

2018-05-26 Thread Rich Shepard
R-3.5.0 is installed here. When I tried to update installed packages errors were reported when their dependencies were built under a prior version of R. Reading ?update.packages() I did not see an option that would automatically update dependences built under an earlier version of R. Is there