Dear Ista,
that sos package is certainly something, didn't know there was one!
It turned out that ips is written by the same person who wrote phyloch,
so the latter must have been an alpha version of the former. The raxml
function worked from ips worked fine -- just a matter of defining the
para
Let's step back for a moment and look at the larger picture. There are
real advantages to using packages on CRAN, including convenient
installation, updates, etc., so let's see if we can find a package on
cran that does what we want:
install.packages("sos")
library(sos)
findFn("raxml")
This sugge
Dear Rui,
thanks for the reply. I tried it but there were serious problems with
the function itself: I can't use it as is because there were different
error messages according to the parameters passed to it.
Such function has to be re-written on purpose or I should call the RAxML
function from
Hello,
You can put the code of that function in a separate file, say "raxml.R"
and then use source("raxml.R"). See the help page ?source.
Hope this helps,
Rui Barradas
Em 28-12-2014 23:09, Luigi Marongiu escreveu:
Dear all,
I would like to run RAxML for phylogenetic analysis as indicated on
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