BSOD with ESS[R] under win2000

2003-03-04 Thread Darryl Greig
I have had a visit from our windows buddy the BSOD twice in one day when running R1.6.2 under ESS5.1.24 on a win2000 platform. I wasn't doing anything special, just moving or resizing the emacs window, although I did have 4 or 5 emacs windows open at the time. Has anyone else observed this problem?

Re: [R] How to draw several plots in one figure?

2003-03-04 Thread Jeremy Z Butler
One way is to make inital plot: plot() Then build other data into the plot using: lines() points() etc. see help files for those Alternatively: set par(new=T) then plot again and the device wont be cleared J. From: "Feng Zhang" <[EMAIL PROTECTED]> To: "Steve Su" <[EMAIL PROTECTED]> CC: R-Help

Re: [R] How to draw several plots in one figure?

2003-03-04 Thread Feng Zhang
Thanks, Su. But I want to plot the several plots in the same x-y axis setting, not in multiple subplots. - Original Message - From: "Steve Su" <[EMAIL PROTECTED]> To: "Feng Zhang" <[EMAIL PROTECTED]> Sent: Wednesday, March 05, 2003 12:29 AM Subject: Re: [R] How to draw several plots in one

RE: [R] How to draw several plots in one figure?

2003-03-04 Thread Henrik Bengtsson
See help(layout). Henrik Bengtsson > -Original Message- > From: [EMAIL PROTECTED] > [mailto:[EMAIL PROTECTED] On Behalf Of Feng Zhang > Sent: den 5 mars 2003 17:05 > To: R-Help > Subject: [R] How to draw several plots in one figure? > > > Hey, > > I want to draw several plots sequentl

[R] How to draw several plots in one figure?

2003-03-04 Thread Feng Zhang
Hey, I want to draw several plots sequently, but have to make them dispaly in one figure. So how to achieve this? Thanks. Fred __ [EMAIL PROTECTED] mailing list http://www.stat.math.ethz.ch/mailman/listinfo/r-help

[R] Autologistic regression

2003-03-04 Thread Andy Bunn
R-helpers: Has anybody developed an autologistic regression function in R? I have some binary data that is spatially autocorrelated and ripe for a binary spatial regression. Any suggestions welcome. -Andy Bunn [[alternate HTML version deleted]]

Re: [R] logistic regression for repeated measurement

2003-03-04 Thread Frank E Harrell Jr
On Wed, 5 Mar 2003 11:14:37 +0900 Hiroto Miyoshi <[EMAIL PROTECTED]> wrote: > Dear R-users > > I need your help. > I have a data set which was collected from > an experiment of one between- and one > within-subject design. And the response > data is coded by success(1)/failure(0). > > The exp

[R] logistic regression for repeated measurement

2003-03-04 Thread Hiroto Miyoshi
Dear R-users (B (BI need your help. (BI have a data set which was collected from (Ban experiment of one between- and one (Bwithin-subject design. And the response (Bdata is coded by success(1)/failure(0). (B (BThe experiment had two groups of subjects: (BThe one was experimental, and th

Re: [R] Parallel programming using R

2003-03-04 Thread Michael Na Li
On Tue, 04 Mar 2003, lun li told this: > Thank you very much for the information of RPvm and RMPI packages. I got > them. > You might want to wait for a few days for snow (Simple Network of Workstations) package to reach CPAN. Or download it from here, http://www.stat.uiowa.edu/~luke/R/clus

Re: [R] How to extract R{i} from lme object?

2003-03-04 Thread Peng
--- Sundar Dorai-Raj <[EMAIL PROTECTED]> wrote: > > > Peng wrote: > > Hi, lme() users, > > > > Can some one tell me how to do this. > > I model Orthodont with the same G for random > > variables, but different R{i}'s for boys and > girls, so > > that I can get sigma1_square_hat for boys and > >

Re: [R] How to extract R{i} from lme object?

2003-03-04 Thread Sundar Dorai-Raj
Peng wrote: Hi, lme() users, Can some one tell me how to do this. I model Orthodont with the same G for random variables, but different R{i}'s for boys and girls, so that I can get sigma1_square_hat for boys and sigma2_square_hat for girls. The model is Y{i}=X{i}beta + Z{i}b + e{i} b ~ iid N(0,G

[R] How to extract R{i} from lme object?

2003-03-04 Thread Peng
Hi, lme() users, Can some one tell me how to do this. I model Orthodont with the same G for random variables, but different R{i}'s for boys and girls, so that I can get sigma1_square_hat for boys and sigma2_square_hat for girls. The model is Y{i}=X{i}beta + Z{i}b + e{i} b ~ iid N(0,G) and e{i} ~

Re: [R] (no subject)

2003-03-04 Thread ripley
On Tue, 4 Mar 2003, Usman Shehu wrote: > It is possible I run R on MINGW32 MSYS? If so how do I configure the MSYS to do > that. MSYS is an environment for building Unix packages under Windows. R runs under Windows: you don't need Unix-emulation tools to run it. We have a much more reliable

Re: [R] problem at installing [R]ade

2003-03-04 Thread ripley
That appears to be a message from your tar. Perhaps try tar zxvf ade4_1.00.tar.gz R INSTALL ade4 I suspect the first step will fail, and it would be because your pthreads library is not the right version. Note that it is using /usr/local/lib, and perhaps something has installed an older version

Re: [R] Sample size and stepAIC, step, or AIC

2003-03-04 Thread ripley
They use AIC as defined by its author, Akaike. With good reason: `sample size' is not a well-defined concept in general, and the R functions are general. Most people call the adjusted (I hesitate to call it `corrected') version `AICC'. I believe the `clarified' 2002 edition of Burnham & Anderso

[R] Disregard:"problem at installing Rade"

2003-03-04 Thread Agustin Lobo
Excuses to the list, this problem is a "peculiarity" of my system that I (thought) had solved, but after installing a (non-R) package seems to be here again. Agus Dr. Agustin Lobo Instituto de Ciencias de la Tierra (CSIC) Lluis Sole Sabaris s/n 08028 Barcelona SPAIN tel 34 93409 5410 fax 34 93

Re: [R] Parallel programming using R

2003-03-04 Thread lun li
Thank you very much for the information of RPvm and RMPI packages. I got them. Best regards, Lun From: "M.Kondrin" <[EMAIL PROTECTED]> To: lun li <[EMAIL PROTECTED]> CC: R-Help <[EMAIL PROTECTED]> Subject: Re: [R] Parallel programming using R Date: Tue, 04 Mar 2003 14:25:02 -0800 lun li

[R] problem at installing Rade

2003-03-04 Thread Agustin Lobo
Hi! I try to install the R version of ade4 on a linux (suse7.3) box with R 1.6.2 (from rpm) and get /usr/local/bin/R INSTALL ade4_1.00.tar.gz tar: /usr/local/lib/libpthread.so.0: version `GLIBC_2.2' not found (required by /lib/librt.so.1) ERROR: cannot extract package from 'ade4_1.00.tar.gz' B

[R] Sample size and stepAIC, step, or AIC

2003-03-04 Thread Martin Henry H. Stevens
Do any R functions incorporate a sample sample size correction (e.g., Burnham and Anderson 1998). Thanks, Hank Stevens Martin Henry H. Stevens, Assistant Professor 338 Pearson Hall Botany Department Miami University Oxford, OH 45056 Office: (513) 529-4206 Lab: (513) 529-4262 FAX: (513) 529-4243 h

RE: [R] r-help-bounces and r-devel-bounces e-mail?

2003-03-04 Thread Marc Schwartz
>-Original Message- >From: [EMAIL PROTECTED] >[mailto:[EMAIL PROTECTED] On Behalf Of Martin Maechler >Sent: Tuesday, March 04, 2003 11:42 AM >To: [EMAIL PROTECTED] >Subject: Re: [R] r-help-bounces and r-devel-bounces e-mail? > > >> "JeffG" == Jeff Gentry <[EMAIL PROTECTED]> >>

[R] implementing ecological models in R

2003-03-04 Thread Thomas Petzoldt
Hi all, we found, that R is not only *the* superior data analysis, graphics and statistics package, but it is also a general tool for implementing, running and teaching ecological models. Last week we held our second course "Modelling in Limnology" using R. Some material (code and docs) was pr

Re: [R] r-help-bounces and r-devel-bounces e-mail?

2003-03-04 Thread Martin Maechler
> "JeffG" == Jeff Gentry <[EMAIL PROTECTED]> > on Tue, 4 Mar 2003 11:53:13 -0500 (EST) writes: >> Any clues? I just noticed that my e-mail filter rule suddenly stopped >> putting these messages in their respective folders this morning (my >> time). JeffG> I believe th

RE: [R] r-help-bounces and r-devel-bounces e-mail?

2003-03-04 Thread Marc Schwartz
>-Original Message- >From: Charles Annis, P.E. >[mailto:[EMAIL PROTECTED] >Sent: Tuesday, March 04, 2003 11:06 AM >To: 'Jeff Gentry'; 'Marc Schwartz' >Cc: [EMAIL PROTECTED] >Subject: RE: [R] r-help-bounces and r-devel-bounces e-mail? > > >You need to add [EMAIL PROTECTED] to your >filter

Re: [R] suggestion for addition to R-lang.texi

2003-03-04 Thread A.J. Rossini
Peter Dalgaard BSA <[EMAIL PROTECTED]> writes: > BTW, I wonder: why did your mail come with sender "r-help-bounces" > instead of the usual r-help-admin and confuse my mail filter? Mailman upgrade? best, -tony -- A.J. RossiniRsrch. Asst. Prof. of Biostatistics U. of

Re: [R] linear model with arma errors

2003-03-04 Thread Renaud Lancelot
Spencer Graves wrote: That's discussed in Pinhiero and Bates, Mixed Effects Models in S and S-Plus. I don't have the book in my hand now, so I can't tell you exactly where to find it. However, I'm pretty confident that it can be done in "lme". Only if the model includes random effects. Otherwi

RE: [R] r-help-bounces and r-devel-bounces e-mail?

2003-03-04 Thread Charles Annis, P.E.
You need to add [EMAIL PROTECTED] to your filtering rules to augment your current rule, [EMAIL PROTECTED] Charles Annis, P.E. [EMAIL PROTECTED] phone: 561-352-9699 eFAX: 503-217-5849 http://www.StatisticalEngineering.com -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTE

Re: [R] r-help-bounces and r-devel-bounces e-mail?

2003-03-04 Thread Jeff Gentry
> Any clues? I just noticed that my e-mail filter rule suddenly stopped > putting these messages in their respective folders this morning (my > time). I believe they're upgrading the Mailman software that runs the list. __ [EMAIL PROTECTED] mailing lis

[R] r-help-bounces and r-devel-bounces e-mail?

2003-03-04 Thread Marc Schwartz
Hi all, Just curious on the sudden change in the e-mail address coming from r-help and r-devel today. They are indicated as being [EMAIL PROTECTED] and [EMAIL PROTECTED] Any clues? I just noticed that my e-mail filter rule suddenly stopped putting these messages in their respective folders this

[R] tseries contains a class for irregularly spaced time series

2003-03-04 Thread Adrian Trapletti
A new version of tseries (0.9-10) has been uploaded to CRAN. The new version contains the class "irts" for irregularly spaced time series. Irregular time series are basically time series where each observation (uni- or multivariate) has a time-stamp represented by an object of class "POSIXct". It p

Re: [R] suggestion for addition to R-lang.texi

2003-03-04 Thread Peter Dalgaard BSA
Stephen Eglen <[EMAIL PROTECTED]> writes: > Small suggestion for the documentation: > > Should the = operator for assignments, described on > http://developer.r-project.org/equalAssign.html, now be included in > the operator table in doc/manual/R-lang.texi? If so, one possibility > could be afte

Re: [R] linear model with arma errors

2003-03-04 Thread Spencer Graves
That's discussed in Pinhiero and Bates, Mixed Effects Models in S and S-Plus. I don't have the book in my hand now, so I can't tell you exactly where to find it. However, I'm pretty confident that it can be done in "lme". Spencer Graves Gregory BENMENZER wrote: Dear all, I'm looking for how

Re: [R] Wavelets correlation test

2003-03-04 Thread Brandon Whitcher
> Hello, I use wavethresh packages to perform wavelet analysis. In > particular, I would like to compare 2 signals (vectors) after a wavelet > decomposition. I would like to use cor.test function, but this function > acts on the entire vector values. I plan to perform a cor.test on each > level of

Re: [R] linear model with arma errors

2003-03-04 Thread Douglas Bates
"Gregory BENMENZER" <[EMAIL PROTECTED]> writes: > Dear all, > > I'm looking for how can I estimate a linear model with ar(ma) errors : > > y(t)=a*X(t)+e(t) with > P(B)e(t)=Q(B)u(t) > > where u is a white noise and P, Q are some polynomes. > > Could you help me ? > > Grégory Benmenzer Perhaps

[R] suggestion for addition to R-lang.texi

2003-03-04 Thread Stephen Eglen
Small suggestion for the documentation: Should the = operator for assignments, described on http://developer.r-project.org/equalAssign.html, now be included in the operator table in doc/manual/R-lang.texi? If so, one possibility could be after lines 1096/7: @item @code{<-} @tab Left assignment,

[R] linear model with arma errors

2003-03-04 Thread Gregory BENMENZER
Dear all, I'm looking for how can I estimate a linear model with ar(ma) errors : y(t)=a*X(t)+e(t) with P(B)e(t)=Q(B)u(t) where u is a white noise and P, Q are some polynomes. Could you help me ? Grégory Benmenzer __ [EMAIL PROTECTED] mailing list ht

Re: [R] How to modify XML documents and save changes

2003-03-04 Thread Duncan Temple Lang
Again, Stephen is right on the mark with his explanation of modifying the XML objects and needing to put the modified values back into the containing structure. Trees & graphs are slightly cumbersome in the S language since it is not a reference-based language. There are some tricks one can use th

[R] Williams' corrected G-test

2003-03-04 Thread Rado Bonk
Hi R-users, Does anybody know under which command is Williams' corrected G-test implemented in R? The test should determine whether the frequency of over- versus under-estimated values differs. Is there any other test in R which was designed to do the same? Best regards, Rado Bonk -- Radoslav

[R] Unit root test for panel data

2003-03-04 Thread Cenktan Ozyildirim
Dear Sir/Madam, I need to apply IPS, Fischer or any other more contemporary panel data unit root test. I would be glad if you could inform me whether there are r-modules which can perform these tests. I thank you very much in advance for your precious time and interest. Yours Sincerely, Cenktan Öz

Re: [R] question about XML (package)

2003-03-04 Thread Duncan Temple Lang
Apologies for the late reply; I was travelling and didn't see the message until Ott brought it to my attention today. Indeed, Stephen's diagnosis and workaround is correct: excessive trimming. I have just put a new version of the package (XML_0.93-2) on the Omegahat web site http://www.omegah

[R] error using try() and coxph()

2003-03-04 Thread vito muggeo
Dear all, I'm experiencing some problems in using the following code to perform simulations with Cox models (using coxph() in survival package): for(i in 1:1000){ dd<-#simulate the dataframe o0<-try(coxph(Surv(start,stop,status)~x,data=dd)) o1<-try(coxph(Surv(start,stop,status)~x+x

[R] (no subject)

2003-03-04 Thread Usman Shehu
Hi, It is possible I run R on MINGW32 MSYS? If so how do I configure the MSYS to do that. Platform: i386-pc, Xp windows Thanks Manu - [[alternate HTML version deleted]] __ [EMAIL PROTECTED] mailing list

Re: [R] Parallel programming using R

2003-03-04 Thread Torsten Hothorn
> lun li wrote: > > Dear All, > > > > For my regression problem(thousand dependents by thousand predictors by > > hundred months observations), I prefer to parallel computation in R. > > Is it possible to parallel programming using R as using C and Fortran? > > > > > > Cheers, > > > > > > Lun > >

Re: [R] Parallel programming using R

2003-03-04 Thread M.Kondrin
lun li wrote: Dear All, For my regression problem(thousand dependents by thousand predictors by hundred months observations), I prefer to parallel computation in R. Is it possible to parallel programming using R as using C and Fortran? Cheers, Lun ___

[R] Instability in package gld in R?

2003-03-04 Thread Steve Su
Dear All, Is there anyone using package gld in R? I have managed to load this package into Splus. I found that in some cases the use of this package will cause Splus to crash and R to hang, I am not sure why but this is just an example: qgl(c(0,1),45.23587,0.2363868,-1.5,0) Which means the fu

Re: [R] tex/pdf?

2003-03-04 Thread Kurt Sys
Mail from [EMAIL PROTECTED], sent on Tuesday March 4 2003 at 09:42 (GMT+): > On Tue, 4 Mar 2003, Kurt Sys wrote: > > > I'm having some problems, now with building > libraries/packages. Actually, with making pdf- or > latex-files. So, everyting is ok, I can generate > latex-files

[R] Parallel programming using R

2003-03-04 Thread lun li
Dear All, For my regression problem(thousand dependents by thousand predictors by hundred months observations), I prefer to parallel computation in R. Is it possible to parallel programming using R as using C and Fortran? Cheers, Lun __ [EMAIL PRO

Re: [R] How to estimate or approximate a 3-D surface

2003-03-04 Thread ripley
On Tue, 4 Mar 2003, Stuart Leask wrote: > Locfit has worked well for me. > http://cm.bell-labs.com/cm/ms/departments/sia/project/locfit/ Unfortunately it has not been updated for current versions of R: it also writes diagnostic output to stderr which is not shown on GUI versions of R (especially

Re: [R] writing several command line in R console

2003-03-04 Thread Peter Dalgaard BSA
"Petr Pikal" <[EMAIL PROTECTED]> writes: > > I would like to know how to step to the next line in the R console > > editor without breaking the continuity of my code more clearly : if > > for example I write a function, so far i have to write the all code > > inside on the same line wich may beco

Re: [R] How to estimate or approximate a 3-D surface

2003-03-04 Thread Stuart Leask
Locfit has worked well for me. http://cm.bell-labs.com/cm/ms/departments/sia/project/locfit/ Stuart Dr Stuart Leask MA MRCPsych, Clinical Lecturer in Psychiatry University of Nottingham Dept of Psychiatry, Duncan Macmillan House Porchester Road, Nottingham. NG3 6AA. UK http://www.nottingham.ac.uk

Re: [R] How to estimate or approximate a 3-D surface

2003-03-04 Thread Simon Wood
Have you tried looking at packages mgcv or gss? > Now I am going to estimate or approximate a surface in > 3-D space given a large enough number of (x,y,z) data sets. > > So for these 3-D data points, is it possible to get a surface > function, like z=f(x,y) to represent this underlying surface?

Re: [R] tex/pdf?

2003-03-04 Thread ripley
On Tue, 4 Mar 2003, Kurt Sys wrote: > I'm having some problems, now with building libraries/packages. Actually, with making pdf- or latex-files. So, everyting is ok, I can generate latex-files ('.tex') using 'R CMD Rdconv -t tex', but apparently, it are not valid latex-files (no 'documentclass'

RE: [R] log axis assignment

2003-03-04 Thread Morten Sickel
From: Jeremy Z Butler [mailto:[EMAIL PROTECTED] > Surely I should be able to set the > ylog option to T using another object (logaxis). > >for (n in colnames(raw)) >{ >if(n=="pH"){logaxis<-"T"} else {logaxis<-"F"} >plot(full.age,raw[,n],type="n",ylog=logaxis) >... >} What (probably) will work is:

[R] tex/pdf?

2003-03-04 Thread Kurt Sys
Hello, I'm having some problems, now with building libraries/packages. Actually, with making pdf- or latex-files. So, everyting is ok, I can generate latex-files ('.tex') using 'R CMD Rdconv -t tex', but apparently, it are not valid latex-files (no 'documentclass', no 'body' etc). How come? Do

[R] R in your pocket on a Sharp Zaurus

2003-03-04 Thread Stuart Leask
R v.1.6.2 is now available for the Sharp SL-5500 Zaurus linux pda. Thanks to the effort of Simon Pickering at Bath University, NA handling is now correct and graphics function fine. It can run on the unexpanded 'out of the box' machine. The FPU emulation can slow some operations a lot, but it can d

Recall: [R] Embed R in other applications

2003-03-04 Thread Pfaff, Bernhard
Pfaff, Bernhard would like to recall the message, "[R] Embed R in other applications". -- If you have received this e-mail in error or wish to read our e-mail disclaimer statement and monitoring policy, please refer to http://w

Re: [R] How to estimate or approximate a 3-D surface

2003-03-04 Thread Petr Pikal
Hi On 3 Mar 2003 at 22:03, Feng Zhang wrote: > Hey, R-listers > > Now I am going to estimate or approximate a surface in > 3-D space given a large enough number of (x,y,z) data sets. > > So for these 3-D data points, is it possible to get a surface > function, like z=f(x,y) to represent this un

RE: [R] Embed R in other applications

2003-03-04 Thread Pfaff, Bernhard
see the contributed pacakge "R2HTML"; in case you have access to a databank: "RODBC" package and the like might also be an option in combination with *.php and/or *.asp-files for web-publishing. I have implemented both and it runs succesfully without any "hickups". Updating the data, running R-prog

Re: [R] writing several command line in R console

2003-03-04 Thread Petr Pikal
Hallo On 4 Mar 2003 at 2:36, Vincent Stoliaroff wrote: > > Hi R lovers > > I would like to know how to step to the next line in the R console > editor without breaking the continuity of my code more clearly : if > for example I write a function, so far i have to write the all code > inside on t

Re: [R] R version conflict.

2003-03-04 Thread Peter Dalgaard BSA
Bai Yan <[EMAIL PROTECTED]> writes: > My mistake :( > Seems that there's another R installed by root. So when I use .libPaths() > there're two of them: > > > .libPaths() > [1] "/disk/hopper/projects/class/cse514/R/library" > [2] "/usr/lib/R/library" > > How could the second path be enabled then?