[R] Fitted probabilities from glmmPQL?

2003-06-14 Thread Robert Keefe
Hello All, Specifying 'type = "response"' when using predict() on a model fit using glm(...,family="binomial") returns fitted probabilities. Is it possible to get the same from a model object fit using glmmPQL() ? Thanks in advance, Rob _ R

Re: [R] more efficient sum of matrix columns

2003-06-14 Thread John Fox
Dear Jean and Jonathan, colSums() should be more efficient, but (unless I misunderstand the size of the problem) a problem this small shouldn't take a half hour. On my ageing 800 MHz, 512MB Windows 2000 PC, the result was essentially instantaneous either way, though an order of magnitude faster

Re: [R] more efficient sum of matrix columns

2003-06-14 Thread Jonathan Baron
On 06/14/03 20:51, Jean Eid wrote: >Dear R users, >I am looking for a more efficient way to compute the sum of columns of a >matrix. >I am currently using apply(data, 2, sum) however, I am building a data set >from another one by summing the columns of some parts of the matrix. >the loop is taking

[R] more efficient sum of matrix columns

2003-06-14 Thread Jean Eid
Dear R users, I am looking for a more efficient way to compute the sum of columns of a matrix. I am currently using apply(data, 2, sum) however, I am building a data set from another one by summing the columns of some parts of the matrix. the loop is taking too long (about 1/2 hour) for a 4462 * 20

Re: [R] building RPMs for R packages

2003-06-14 Thread Peter Dalgaard BSA
Cooper Bethea <[EMAIL PROTECTED]> writes: > the reason i need to build a package here (and the reason any other sys. > admin on an rpm-based system should) is because packages not installed > under rpm have a chance of breaking during system upgrades. in order to > maintain my sanity, i need to kn

Re: [R] building RPMs for R packages

2003-06-14 Thread Cooper Bethea
On Sat, 2003-06-14 at 04:12, Martin Maechler wrote: > I'm not really answering your primary question, > BUT - don't you share some file system(s) between all clients? *share library directory across cluster* > > - if you don't share any file systems {quite improbable} AND *distribute l

Re: [R] Confidence intervals plot

2003-06-14 Thread kjetil brinchmann halvorsen
On 14 Jun 2003 at 20:44, Ramon Martínez Coscollà wrote: Hola! First set up a plot with plot( c(x.lower, x.upper) , c(y.lower, y.upper), type="n" ) and then add each line using segments Kjetil Halvorsen > Hi all!! > > I am trying to plot several confidence intervals in a unique plot. That is,

RE: [R] Confidence intervals plot

2003-06-14 Thread Marc Schwartz
>-Original Message- >From: [EMAIL PROTECTED] >[mailto:[EMAIL PROTECTED] On Behalf Of Ramon >Martínez Coscollà >Sent: Saturday, June 14, 2003 1:44 PM >To: [EMAIL PROTECTED] >Subject: [R] Confidence intervals plot > > >Hi all!! > >I am trying to plot several confidence intervals in a unique

Re: [R] Confidence intervals plot

2003-06-14 Thread Duncan Murdoch
On Sat, 14 Jun 2003 20:44:09 +0200, you wrote: >Hi all!! > >I am trying to plot several confidence intervals in a unique plot. That is, for each >x, I have a confidence interval for a parameter related to x and I would like to plot >them in the same plot, in order to compare them. The plot would

[R] Confidence intervals plot

2003-06-14 Thread Ramon Martínez Coscollà
Hi all!! I am trying to plot several confidence intervals in a unique plot. That is, for each x, I have a confidence interval for a parameter related to x and I would like to plot them in the same plot, in order to compare them. The plot would look like some parallel vertical lines, each one co

[R] Missing data augmentation

2003-06-14 Thread Jonck van der Kogel
Hi all, A short while ago I asked a question about multiple imputation and I got several helpful replies, thanks! I have untill now tried to use the packages mice and norm but both give me errors however. mice does not even run to start with and gives me the following error right away: iter imp

Re: [R] Normalizing data

2003-06-14 Thread Wolfgang Viechtbauer
> >I have a question about normalizing data. The goal is to normalize the > >dataset per column, so all the data in each column is scaled to the > >interval (0,1), will have a mean of 0 and a standard deviation of 1. Note that standardizing (i.e., taking a bunch of observations, subtracting the me

Re: [R] Normalizing data

2003-06-14 Thread Jonathan Baron
On 06/14/03 14:57, Jonck van der Kogel wrote: >Hello dear R-list members, >I have a question about normalizing data. The goal is to normalize the >dataset per column, so all the data in each column is scaled to the >interval (0,1), will have a mean of 0 and a standard deviation of 1. In psycholo

[R] Normalizing data

2003-06-14 Thread Jonck van der Kogel
Hello dear R-list members, I have a question about normalizing data. The goal is to normalize the dataset per column, so all the data in each column is scaled to the interval (0,1), will have a mean of 0 and a standard deviation of 1. I know the way to do this is to take each datapoint, subtract

RE: [R] Using jpeg() function over cgi

2003-06-14 Thread Adaikalavan Ramasamy
As Prof.Ripley has kindly pointed out, bitmap and Xvbf are possible solutions. See also replies from vfasciani on Tuesday, March 18, 2003 5:32 PM Wednesday, March 19, 2003 6:36 PM You might also want to check out the e-mail from Steve Chen regarding R and PHP on Friday, June 13, 2003 2:36 AM Re

Re: [R] building RPMs for R packages

2003-06-14 Thread Martin Maechler
> "Cooper" == Cooper Bethea <[EMAIL PROTECTED]> > on 13 Jun 2003 14:28:02 -0400 writes: Cooper> hi all- apologies if this question has come up Cooper> before; i took a swing through a few months of Cooper> archives and didn't turn anything up. Cooper> i'm a linux syste

Re: [R] problem installing packages from source on win2k

2003-06-14 Thread Prof Brian Ripley
The short answer is that you are not following readme.packages, which says If you want to make compiled html (.chm) files you will need the Microsoft HTML Help Workshop, currently available for download at http://msdn.microsoft.com/library/en-us/htmlhelp/html/hwmicrosofthtmlhelpdownloads.as