On 27 Sep 2003 at 13:30, Setsuko Kinoshita wrote:
Try package cluster:
library(cluster)
?daisy # computes dissimilarity matrix with missing data
?agnes # aglomerative nesting
Kjetil Halvorsen
> Dear Sir,
>
> This is Ms. Setsuko Kinoshita writing from Japan.
>
> I have a question about " missi
Dear colleagues,
I am beginner, so the primitive questions:
in pls.pcr package in the function mvr I need to indicate a matrix of observations and
a vector of responses.
But read.table function returns the data.frame object.
What is the way for conversion of the data.frame object into matrix
Dear Sir,
This is Ms. Setsuko Kinoshita writing from Japan.
I have a question about " missing value" in Hierarchical Clustering.
Hierarchical Clustering was not available the data with missing value for earlier
version of "R".
I used Euclidean distance and complete linkage m
I plan on analyzing some bird point count data. I need to develop a
re-sampling regime for data like this.
I used scan(file="Sample.txt",what=list(0,0,0,0,0,0),sep="\t")
[[1]]
[1] 1 2 3 4 5
[[2]]
[1] 6 7 8 9 NA
[[3]]
[1] 10 11 12 13 NA
[[4]]
[1] 14 15 16 NA NA
[[5]]
[1] 17 18 19 20 21
Each r
I'm afraid you're going to have to look it up in a basic statistics
textbook.
Ben Bolker
On Fri, 26 Sep 2003, Yao, Minghua wrote:
> Thanks, Ben.
>
> Could you tell me the formula for calculating this sd., given (x_i, y_i)
> (i=1,2,...,N)?
> We only have one intercept and slope for them.
Hello,
a. when I use hclust with the methods media, centroid, and mcquitty,
and plot the results, the dendrograms have lines that are crossing each
other. Is this ok?
b. My next question refers to plot.dendrogram: How can I use parameters
as "hang" or "cex" here? E.g. for
st <- as.dendrogram(su
Thanks, Ben.
Could you tell me the formula for calculating this sd., given (x_i, y_i)
(i=1,2,...,N)?
We only have one intercept and slope for them.
-Minghua
-Original Message-
From: Ben Bolker [mailto:[EMAIL PROTECTED]
Sent: Friday, September 26, 2003 4:34 PM
To: Yao, Minghua
Cc: R Help
Since the intercept and slope are estimated parameters, they have
sampling distributions described by their means and standard deviations.
The s.d. tells you the size of the uncertainty in intercept & in slope.
This is a pretty basic stats question -- you need to refer to a standard
textb
Dear all,
I have the following output generated by linear regression. Since there is
only one regression intercept and one slope for one set of data, what is the
meaning of std. error for intercept and that of slope? Thanks in advance.
Sincerely,
Minghua
> data(thuesen)
> attach(thuesen)
> lm
Peter,
I had tetex installed but not all the additional packages. I installed the
missing packages and the R.src.rpm built just fine on the first Fedora
Core test release (RHL 9.0.93 codenamed Severn). Thanks for the help.
Take care.
-Morgan
On Thu, 25 Sep 2003, Peter Dalgaard BSA wrote:
> Mor
Greetings,
I am doing many iterations of simple optimizations using the
L-BFGS-B method of optim() in R-1.6.2. Very rarely (about 1
in every 100,000 trials), a process will encounter some
problem in optim that triggers the error message "non-finite
value su
On Fri, 26 Sep 2003, Simon Fear wrote:
> > -Original Message-
> > From: Henrik Bengtsson [mailto:[EMAIL PROTECTED]
> > Sent: 26 September 2003 16:43
>
>
> > ... the intention
> > is to find a style that avoid problems like yours, where it says that
> > you should avoid periods in function
Simon Fear wrote:
From: Henrik Bengtsson [mailto:[EMAIL PROTECTED]
... the intention
is to find a style that avoid problems like yours, where it says that
you should avoid periods in function names except if you use it for S3
class methods. Feedback is appreciated.
So, I don't see uni
> -Original Message-
> From: Henrik Bengtsson [mailto:[EMAIL PROTECTED]
> Sent: 26 September 2003 16:43
> ... the intention
> is to find a style that avoid problems like yours, where it says that
> you should avoid periods in function names except if you use it for S3
> class methods. Fee
A mailing list has been opened, and a collection of web pages assembled,
to provide a joint forum for R spatial projects, where spatial data is
understood mostly as geographical data.
The mailing list is for discussing the development and use of R functions
and packages for handling and analysis o
On Fri, 26 Sep 2003, Axel Benz wrote:
> Hi,
> I am about to write functions for multivariate kernel densitiy estimation
> with mixed categorical and continuous date (accoring to Jeff Racine and Qi
> Li), and the leave-one-out window esitmation needs a lot of computation.
> I am now optimizing the
Axel -
I believe that a function argument is not literally copied
until the first time it is modified within the function.
See email exchanges on this list from/to Ross Boylan within
the month of September for a more authoritative answer to
this question. (Do you know about the R-help archives a
Andreas -
help("postscript") says:
"Arguments: file: ... For use with 'onefile=FALSE'
give a 'printf' format such as `"Rplot%03d.ps"'
(the default in that case)."
The "%03d" will be replaced with a three digit number
in the actual file name. This allows postscript() to
generate a distin
Hi, it looks from the names of your argument that your function is a
"plain function", i.e. it is not a function specific to a class. If this
is true, I would avoid the period and rename your function to
solveLP <- function(cvec, bvec, Amat, maximum, maxiter, verbose) ...
Under the S3 style of
Hi,
I am about to write functions for multivariate kernel densitiy estimation
with mixed categorical and continuous date (accoring to Jeff Racine and Qi
Li), and the leave-one-out window esitmation needs a lot of computation.
I am now optimizing the code performance and therefore fhe following
ques
Hi,
I have a puzzeling problem. I want to export graphics from R to TeX via
postscript(). This works fine for some graphs, but for others, the eps
remain empty when viewed with GSView. When such an empty eps is imported
to TeX, the figure appears upside down and very small, irrespective of
TeX widt
Hi,
I wrote a package for linear programming and want to submit it to CRAN.
Since the package 'quadprog' has a function with the name 'solve.QP' to
perform Quadratic Programming, I named my (main) function 'solve.LP'.
However 'R CMD check' gives one warning:
* checking generic/method consisten
Hello!
There is a group of administartors of Russian internet site
www.linuxportal.ru (this is mainly a forum for linux-users) who are
intended to host on this site mirrors of linux distributions and open
source software with http and ftp access. I have proposed to them to
open there a CRAN mir
On 26 Sep 2003 at 15:22, Olivier ETERRADOSSI wrote:
This is really in "An introduction to R".
Does the following help?
> test <- rnorm(100) + 1i*rnorm(100)
> summary(test)
Length ClassMode
100 complex complex
> plot(test)
# gives a plot of real versus imaginary parts.
Kjetil Halvor
Peter Dalgaard BSA wrote:
Laurent Faisnel <[EMAIL PROTECTED]> writes:
Peter Dalgaard BSA wrote:
Laurent Faisnel <[EMAIL PROTECTED]> writes:
Hi,
I'm trying to compile R-1.7.1 from source (on a RedHat 8.0) instead of
using the binary version, as it has often been advised.
However I don't manage
I'm not certain what you want, but have you considered the following:
tst <- (rnorm(5)+1i*rnorm(5))
plot(Re(tst), Im(tst))
plot(Mod(tst), Arg(tst))
hope this helps. spencer graves
Olivier ETERRADOSSI wrote:
Hello to everybody,
... and sorry if the question has already been answered.
I am deali
I recieved and replied to this same post yesterday. Did you
receive my reply?
Also, have you searched www.r-project.org -> Search -> "R site
search"?
hope this helps. spencer graves
Karim Elsawy wrote:
Hi,
I wonder if there is any R package or function which produces the
co
Hello to everybody,
... and sorry if the question has already been answered.
I am dealing with complex numbers and need a way of plotting them on
angular plots (2D and 3D). Is there a package that already manage this,
or can somebody in this R-world who could help me with his skill ?
Thanks to a
Laurent Faisnel <[EMAIL PROTECTED]> writes:
> Peter Dalgaard BSA wrote:
> > Laurent Faisnel <[EMAIL PROTECTED]> writes:
> >
> >>Hi,
> >>
> >>I'm trying to compile R-1.7.1 from source (on a RedHat 8.0) instead of
> >>using the binary version, as it has often been advised.
> >>However I don't manage
Peter Dalgaard BSA wrote:
Laurent Faisnel <[EMAIL PROTECTED]> writes:
Hi,
I'm trying to compile R-1.7.1 from source (on a RedHat 8.0) instead of
using the binary version, as it has often been advised.
However I don't manage to find a solution to the following error which
occurs during the make p
Hello,
I am using the parameterized EM- Algorithm in clustering context.
I use generated datasets, containing 5000 points in 20 dimensions with 5
clusters.
The following poses a problem for me:
emEst<-me(modelName="EEV",data=data[,1:numDimensions],z=unmap(x))
emEst<-me(modelName="VEV"
Laurent Faisnel <[EMAIL PROTECTED]> writes:
> Hi,
>
> I'm trying to compile R-1.7.1 from source (on a RedHat 8.0) instead of
> using the binary version, as it has often been advised.
> However I don't manage to find a solution to the following error which
> occurs during the make procedure :
>
> On Fri, 26 Sep 2003 10:32:21 +0200,
> Christoph Lehmann (CL) wrote:
> Hi
> I need to overlay two pixmaps (library (pixmap)). One, a pixmapGrey, is
> the basis, and on this I need to overlay a pixmapIndexed, BUT: the
> pixmapIndexed has set only some of its "pixels" to an indexed
> I would like to make a lesast squares regression similar to that what
is
> done by the command "lm". But additionally, I would like to impose some
> restrictions:
> 1) The sum of all regression coefficients should be equal to 1.
> 2) Each coefficient should assume a value between 0 and 1. (inequa
Christoph Lehmann wrote:
> I need to overlay two pixmaps (library (pixmap)). One, a pixmapGrey, is
> the basis, and on this I need to overlay a pixmapIndexed, BUT: the
> pixmapIndexed has set only some of its "pixels" to an indexed color,
> many of its pixels should not cover the basis pixmapGrey
Hi,
I'm trying to compile R-1.7.1 from source (on a RedHat 8.0) instead of
using the binary version, as it has often been advised.
However I don't manage to find a solution to the following error which
occurs during the make procedure :
/!\---/!\
buildin
Hi,
I wonder if there is any R package or function which produces the
coordinates of a 3d contour (isosurface)
from a 3d data array.
any suggestions are very much appreciated
best regards
karim
__
[EMAIL PROTECTED] mailing list
https://www.stat.math.eth
Dear R Users,
I would like to make a lesast squares regression similar to that what is
done by the command "lm". But additionally, I would like to impose some
restrictions:
1) The sum of all regression coefficients should be equal to 1.
2) Each coefficient should assume a value between 0 and 1.
On Fri, 2003-09-26 at 07:50, Martin Maechler wrote:
> As many of you have probably realized, the spam filtering
> at @stat.math.ethz.ch has been dead for since yesterday (09-25)
> ~16:50 till today ~08:30.
>
> The sudden death may have been caused by unrelated installation
> of some perl modules
Hi
I need to overlay two pixmaps (library (pixmap)). One, a pixmapGrey, is
the basis, and on this I need to overlay a pixmapIndexed, BUT: the
pixmapIndexed has set only some of its "pixels" to an indexed color,
many of its pixels should not cover the basis pixmapGrey pixel, means,
for this "in pix
Hi
I need to overlay two pixmaps (library (pixmap)). One, a pixmapGrey, is
the basis, and on this I need to overlay a pixmapIndexed, BUT: the
pixmapIndexed has set only some of its "pixels" to an indexed color,
many of its pixels should not cover the basis pixmapGrey pixel, means,
for this "in pix
> On Thu, 25 Sep 2003 13:04:21 -0400,
> Bing Zhang (BZ) wrote:
> Hi All,
> I am using the allShortestPath function based on Floyd's algorithm in e1071
> package. It runs great when I have less than 5000 nodes. But when I tried to
> work on more than 5000 nodes, I ran into memory
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