On Tue, 7 Sep 2004, Roger D. Peng wrote:
> Are you using an optimized BLAS for both builds? That's one
> possibility. Also, 64-bit builds use up more memory initially since the
> pointers are bigger. I've tried both 64-bit and 32-bit builds on
> Sparc/Solaris and haven't seen any slowdown.
It
On Tue, 7 Sep 2004, Sigal Blay wrote:
> On Tue, Sep 07, 2004 at 04:57:57PM -0400, Duncan Murdoch wrote:
> > On Tue, 7 Sep 2004 12:46:55 -0700, S Blay <[EMAIL PROTECTED]> wrote :
> >
> > >I wrote an R wrapper function (phylpro) around a C function
> > >(Rphylpro).
> > >The first time I'm running
On Tue, 7 Sep 2004, Liaw, Andy wrote:
> A small drawback to Gabor's proposal:
>
> > "aa" %:% "dd"
> [1] "b" "c" "d"
> > "00" %:% "99"
> character(0)
>
> Defining it as a seq() method for characters is probably not a terribly good
> idea, as one should expect it to work for any character vectors
A small drawback to Gabor's proposal:
(B
(B> "aa" %:% "dd"
(B[1] "b" "c" "d"
(B> "00" %:% "99"
(Bcharacter(0)
(B
(BDefining it as a seq() method for characters is probably not a terribly good
(Bidea, as one should expect it to work for any character vectors as input.
(B(One can argue that
Gabor Grothendieck myway.com> writes:
:
: åæ capitalbio.com> writes:
:
: : Thanks a lot for your timely rely.
: : I still wonder whether I can use "a":"d" instead of 1:4.
: : I remember I fulfill it successfully according to the guidance of some
: materials on R,but fail to find it now.
:
:
åæ capitalbio.com> writes:
: Thanks a lot for your timely rely.
: I still wonder whether I can use "a":"d" instead of 1:4.
: I remember I fulfill it successfully according to the guidance of some
materials on R,but fail to find it now.
You could define your own seq function and operator:
R> "%
Hi,
On Tue, 7 Sep 2004, Kathy DeRiemer wrote:
> Hi there,
>
> I downloaded version 1.9.1 WinZip file, 9.367 bytes ( so I can update my R
Uit doesn't sound right, 9 bytes
> and use the vcd package) but cannot get the download from your Web site to
> unzip and install. So silly!
>
>
Hi there,
I downloaded version 1.9.1 WinZip file, 9.367 bytes ( so I can update my R
and use the vcd package) but cannot get the download from your Web site to
unzip and install. So silly!
The error message is :" Error reading header after processing 0
entries." I tried downloading from 3 dif
Are you using an optimized BLAS for both builds? That's one possibility. Also,
64-bit builds use up more memory initially since the pointers are bigger. I've
tried both 64-bit and 32-bit builds on Sparc/Solaris and haven't seen any slowdown.
-roger
Jason Liao wrote:
Hello, everyone! I guess n
Hello, everyone! I guess no one is still using R on Sun Sparc these
days. But our department has a (pretty new) two-CPU Sun server. We
recently compiled R as a 64 bit application and expected a performance
boost. But it runs 25-30% slower than the 32 bit version of R. Anyone
knows why this is so? T
On Tue, Sep 07, 2004 at 04:57:57PM -0400, Duncan Murdoch wrote:
> On Tue, 7 Sep 2004 12:46:55 -0700, S Blay <[EMAIL PROTECTED]> wrote :
>
> >I wrote an R wrapper function (phylpro) around a C function
> >(Rphylpro).
> >The first time I'm running my function, it runs with no errors.
> >The second
Thanks a lot for your timely rely.
I still wonder whether I can use "a":"d" instead of 1:4.
I remember I fulfill it successfully according to the guidance of some materials on
R,but fail to find it now.
Thanks again!
__
[EMAIL PROTECTED] mailing list
ht
Hi,
On Wed, 8 Sep 2004, [gb2312] ÃÏÐÀ wrote:
> Hello,sir: Here's a little question about R which needs your help.Thanks in advance.
> If I wanna make a sequence just like a,b,c,d (In other words,a vector consists of 4
> characters :a,b,c,d ).How can I do it in a shortcut manner? Yes,I can do it
letters[1:4]
Alec Stephenson
Department of Statistics
Macquarie University
NSW 2109, Australia
>>> " $(AÃÏÐÀ" <[EMAIL PROTECTED]> 09/08/04 10:41am >>>
Hello,sir: Here's a little question about R which needs your help.Thanks in advance.
If I wanna
letters[1;4]
LETTERS[1:4] for capitals.
Hope this helps,
Matt Wiener
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of [EMAIL PROTECTED]
Sent: Tuesday, September 07, 2004 8:42 PM
To: [EMAIL PROTECTED]
Subject: [R] a little question about R
Hello,sir: Her
Try
letters[1:4]
-roger
åæ wrote:
Hello,sir: Here's a little question about R which needs your help.Thanks in advance.
If I wanna make a sequence just like a,b,c,d (In other words,a vector consists of 4 characters :a,b,c,d ).How can I do it in a shortcut manner? Yes,I can do it as following: c("a"
You can use letters[1:4].
(B
(BI hope that this helps,
(B John
(B
(B> -Original Message-
(B> From: [EMAIL PROTECTED]
(B> [mailto:[EMAIL PROTECTED] On Behalf Of ??
(B> Sent: Tuesday, September 07, 2004 7:42 PM
(B> To: [EMAIL PROTECTED]
(B> Subject: [R] a little question about R
Are you talking about repeated rows? Does unique() do what you want?
-roger
Rebecca Young wrote:
Hello,
I am a new R user. I am trying to calculate vector correlations for all
pairwise comparisons in my data frame without repeats. I am familiar with the
expand.grid function, but this includes re
Hello,sir: Here's a little question about R which needs your help.Thanks in advance.
If I wanna make a sequence just like a,b,c,d (In other words,a vector consists of 4
characters :a,b,c,d ).How can I do it in a shortcut manner? Yes,I can do it as
following: c("a","b","c","d") and the result is:
Hello,
I am a new R user. I am trying to calculate vector correlations for all
pairwise comparisons in my data frame without repeats. I am familiar with the
expand.grid function, but this includes repeats. Is there a way to use
expand.grid and eliminate repeats? Or is there another function th
Sorry. I think you need the argument distfun=as.dist. E.g.,
heatmap(x, distfun=as.dist, symm=TRUE, scale="none")
Andy
> From: Liaw, Andy
>
> I believe you want to pass the (symmetric) matrix as is,
> rather than wrapped
> in as.dist(). E.g.,
>
> x <- as.matrix(dist(matrix(rnorm(100), 20, 5
I believe you want to pass the (symmetric) matrix as is, rather than wrapped
in as.dist(). E.g.,
x <- as.matrix(dist(matrix(rnorm(100), 20, 5)))
heatmap(x, symm=TRUE, scale="none")
HTH,
Andy
> From: Paul Lepp
>
> Dear R wizards,
> Hopeful someone can help me with what I believe is a
> p
Dear R wizards,
Hopeful someone can help me with what I believe is a pretty simple task. I
pretty new to R so some (much) of the obvious escapes me. How do I get a
distance matrix into heatmap? What do I tell distfun if what I'm trying to
map is already an ordered distance matrix? I trie
Great summary, Rolf.
Just one minor issue that recently bit me: In a data mining
application with hundred of p-values, people want to make subtle
distinctions based on extremely small p-values. In such applications,
even a modest amount of skewness (to say nothing of outliers) migh
It looks to me like what you are doing is trying to judge
significance of differences by non-overlap of single-sample
confidence intervals. While this is appealing, it's not quite
right.
I just looked into my copy of Applied Nonparametric Statistics
(second ed.) by Wayne W. Daniel (Duxbury, 1990)
On Tue, 7 Sep 2004, Adaikalavan Ramasamy wrote:
> Out of curiosity, why is srt not respected in mtext ? See examples below
It doesn't make a lot of sense. mtext is about putting text on >m It would be nice to have 'srt' as an argument in mtext in future.
You haven't been listening to the discus
Out of curiosity, why is srt not respected in mtext ? See examples below
plot(1:10, xaxt="n");
par(srt=45)
mtext( paste("Point", LETTERS[1:10]), side=1, at=1:10 )
plot(1:10, xaxt="n");
mtext( paste("Point", LETTERS[1:10]), side=1, at=1:10, srt=45 )
It would be nice to have 'srt' as an argumen
On Tue, 7 Sep 2004 12:46:55 -0700, S Blay <[EMAIL PROTECTED]> wrote :
>I wrote an R wrapper function (phylpro) around a C function
>(Rphylpro).
>The first time I'm running my function, it runs with no errors.
>The second time I'm trying to run it, I get an error message
>with the first argument
Dear all,
I am conducting a full factorial analysis. I have one factor consisting
in algorithms, which I consider my treatments, and another factor made
of the problems I want to solve. For each problem I obtain a response
variable which is stochastic. I replicate the measure of this response
valu
I wrote an R wrapper function (phylpro) around a C function
(Rphylpro).
The first time I'm running my function, it runs with no errors.
The second time I'm trying to run it, I get an error message
with the first argument to .Call garbled.
Set up:
> dyn.load("Phylpro.so")
> source("phylpro.R")
>
On Tue, 2004-09-07 at 12:52, Rajarshi Guha wrote:
> Hello,
> is there a way in which I can use text labels rather than numbers on
> the x axis ticks? I basically have a vector of (say) 8 points and I want
> to plot these sequentially. Thus the x axis would have ticks at 1 .. 8.
> Rather than havi
Hi!
first supress axis drawing with param axes=FALSE in your plot function.
The use axis function to add your axes.
?axis
/E
On Tue, 7 Sep 2004, Rajarshi Guha wrote:
> Hello,
> is there a way in which I can use text labels rather than numbers on
> the x axis ticks? I basically have a vector of
robust standard errors are available from coxph with the option
robust=TRUE.
-thomas
On 6 xxx -1, The Michaelson Institute wrote:
> Hello, I'm an MD working in an eye clinic. I'm learning by myself to use R
> for use in my research works and for implementation in a software project.
> T
Hello,
is there a way in which I can use text labels rather than numbers on
the x axis ticks? I basically have a vector of (say) 8 points and I want
to plot these sequentially. Thus the x axis would have ticks at 1 .. 8.
Rather than having the labels 1 .. 8 I would like to have some arbitrary
tex
Kevin,
Thanks for the advice. However, I was pretty careful to include a
par(new=T) [see below].
Sean
On Sep 7, 2004, at 1:14 PM, Kevin Bartz wrote:
The problem is that most base plotting functions first wipe the
graphics
device clean. To do what you want, you need to use par(new = T)
libe
The problem is that most base plotting functions first wipe the graphics
device clean. To do what you want, you need to use par(new = T) liberally
between plots. Does that work for you?
Kevin
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Sean Davis
Sent
Hello
I am having some trouble figuring out how to write contrast/test syntax for
the following mixed model regression y ~ group*age + group*age^2 random
=~1|ID
(i have centered the age variable & there are only 2 groups)
the contrast i am trying to construct should compare the overall shape o
I would like to use gridBase to place four separate heatmaps (actually,
a stripped-down heatmap.2 from ght gregmisc package that contains only
the "image" part) into four different viewports. I can get the
placement correct, but I keep 'losing' the previous plot. Any
suggestions?
Here is
On Sat, 4 Sep 2004, Jack Tanner wrote:
> Under WinXP, I have a system DSN called foo. It has stored
> username/password information. (I can click Configure in ODBC
> Administrator and then Test Data Source connects to MySQL without me
> re-entering data.)
>
> Using RODBC, I can connect to the
Thanks all! It appears I just had the par in the wrong place in my loop.
Laura Quinn
Institute of Atmospheric Science
School of Earth and Environment
University of Leeds
Leeds
LS2 9JT
tel: +44 113 343 1596
fax: +44 113 343 6716
mail: [EMAIL PROTECTED]
On Tue, 7 Sep 2004, Petr Pikal wrote:
>
>
On 7 Sep 2004 at 15:37, Laura Quinn wrote:
> Ok, I have reinstalled R-1.9.0 and this appears to have fixed the
> problems I was having with png(). However, I have a further question
> regarding png()
>
> Is it possible to pass a par() argument to the png() command? I am
> wanting to produce 4 p
Insert the par() call after png(). par() is device-specific.
Andy
> From: Laura Quinn
>
> Ok, I have reinstalled R-1.9.0 and this appears to have fixed the
> problems I was having with png(). However, I have a further question
> regarding png()
>
> Is it possible to pass a par() argument to th
The following is not a problem in R 1.9.1:
> png(file = "test.png")
> par(mfrow = c(2,2))
> plot(c(1:10))
> plot(c(1:10))
> plot(c(1:10))
> plot(c(1:10))
> dev.off()
null device
1
>
Have you tried that?
HTH,
Partha
Laura Quinn <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
09/07
Laura Quinn wrote:
Ok, I have reinstalled R-1.9.0 and this appears to have fixed the
problems I was having with png(). However, I have a further question
regarding png()
Is it possible to pass a par() argument to the png() command? I am
wanting to produce 4 plots per object, which I normally acheiv
"Bickel, David" wrote:
>
> Does anyone know how to use the equivalent of debug() on an S4 method? I would like
> R to enter the browser not for the generic function, but for the method of the class
> that I specify.
This is what the trace() function does, if you supply the signature=
argument s
Are you calling png before your par command--I think you should.
> png (file='filename')
> par(mfrow=c(1,4))
> plot(1:10)
> plot(1:10)
> plot(1:10)
> plot(1:10)
> dev.off()
See if that works for you.
Sean
On Sep 7, 2004, at 10:37 AM, Laura Quinn wrote:
Ok, I have reinstalled R-1.9.0 and this appear
At 06:17 07/09/2004, you wrote:
Hi guys.
Check this out:
NaN +NA
[1] NaN
NA + NaN
[1] NA
I thought "+" was commutative by definition. What's going on?
In my version, both cases is NA:
> NaN +NA
[1] NA
> NA + NaN
[1] NA
>
R.version
_
platform i386-pc-mingw32
arch i386
os min
Ok, I have reinstalled R-1.9.0 and this appears to have fixed the
problems I was having with png(). However, I have a further question
regarding png()
Is it possible to pass a par() argument to the png() command? I am
wanting to produce 4 plots per object, which I normally acheive on an X
window b
At 09:27 07/09/2004, you wrote:
Bernardo Rangel Tura wrote:
At , The Michaelson Institute wrote:
How can R be used to calculate the prevalence ratios using Cox regression +
robust variance estimates ?
Well,
In Design package have a command: cph
This command have a option "robsut" with default=FALSE
Peter Dalgaard wrote:
Gavin Simpson <[EMAIL PROTECTED]> writes:
configure:25282: gcc -o conftest -D__NO_MATH_INLINES -mieee-fp -O2 -g
-pipe -march=i386 -mcpu=i686 -I/usr/local/include -L/usr/local/lib
conftest.c -lreadline -ldl -lncurses -lm -L/usr/local/lib
-L/usr/lib/gcc-lib/i386-redhat-linux/
Bernardo Rangel Tura wrote:
At , The Michaelson Institute wrote:
How can R be used to calculate the prevalence ratios using Cox
regression +
robust variance estimates ?
Well,
In Design package have a command: cph
This command have a option "robsut" with default=FALSE, but in help is
write:
" ...
On 7 Sep 2004, Peter Dalgaard wrote:
> Robin Hankin <[EMAIL PROTECTED]> writes:
>
> > Dear Professor Ripley
> >
> > thank you for your reply.
> >
> > >
> > >> > NaN +NA
> > >> [1] NaN
> > >> > NA + NaN
> > >> [1] NA
> > >>
> > >> I thought "+" was commutative by definition. What's goin
At , The Michaelson Institute wrote:
How can R be used to calculate the prevalence ratios using Cox regression +
robust variance estimates ?
Well,
In Design package have a command: cph
This command have a option "robsut" with default=FALSE, but in help is write:
" ... robust if TRUE a robust varian
On Tue, 7 Sep 2004, Gavin Simpson wrote:
> Prof Brian Ripley wrote:
> > Is libg2c.so in your library path? That's one common problem.
>
> Many thanks for your reply Prof. Ripley. How can I check what my library
> path is?
>
> cat /etc/ld.so.conf gives
>
> include ld.so.conf.d/*.conf
> /usr/X1
Gavin Simpson <[EMAIL PROTECTED]> writes:
> configure:25282: gcc -o conftest -D__NO_MATH_INLINES -mieee-fp -O2 -g
> -pipe -march=i386 -mcpu=i686 -I/usr/local/include -L/usr/local/lib
> conftest.c -lreadline -ldl -lncurses -lm -L/usr/local/lib
> -L/usr/lib/gcc-lib/i386-redhat-linux/3.3.3
> -L/usr
Alternatively, use the plotCI() function from the gregmisc package.
-G
-Original Message-
From: [EMAIL PROTECTED]
To: [EMAIL PROTECTED]
Cc: [EMAIL PROTECTED]
Sent: 9/7/04 5:08 AM
Subject: Re: [R] how to add error bar to the data in R?
Hello,
Use the function xYplot from hmisc package
Robin Hankin <[EMAIL PROTECTED]> writes:
> Dear Professor Ripley
>
> thank you for your reply.
>
> >
> >> > NaN +NA
> >> [1] NaN
> >> > NA + NaN
> >> [1] NA
> >>
> >> I thought "+" was commutative by definition. What's going on?
> >
> >It is clearly not under your compiler/OS. We could
Prof Brian Ripley wrote:
Is libg2c.so in your library path? That's one common problem.
Many thanks for your reply Prof. Ripley. How can I check what my library
path is?
cat /etc/ld.so.conf gives
include ld.so.conf.d/*.conf
/usr/X11R6/lib
/usr/lib/qt-3.3/lib
/usr/local/lib
and I don't have LD_LIB
Dear Professor Ripley
thank you for your reply.
> NaN +NA
[1] NaN
> NA + NaN
[1] NA
I thought "+" was commutative by definition. What's going on?
It is clearly not under your compiler/OS. We could add a configure test
for broken systems and fix it in arithmetic.c but it hardly seems
wort
On Tue, 2004-09-07 at 12:47, Prof Brian Ripley wrote:
> On Tue, 7 Sep 2004, Robin Hankin wrote:
>
> > Check this out:
>
> I am unable to reproduce it on any of the 7 different systems I checked
> (Solaris, Linux, Windows with various compilers).
>
> > > NaN +NA
> > [1] NaN
> > > NA + NaN
> > [
On Tue, 7 Sep 2004, Robin Hankin wrote:
> Check this out:
I am unable to reproduce it on any of the 7 different systems I checked
(Solaris, Linux, Windows with various compilers).
> > NaN +NA
> [1] NaN
> > NA + NaN
> [1] NA
>
> I thought "+" was commutative by definition. What's going on?
Hi guys.
Check this out:
NaN +NA
[1] NaN
NA + NaN
[1] NA
I thought "+" was commutative by definition. What's going on?
R.version
_
platform powerpc-apple-darwin6.8
arch powerpc
os darwin6.8
system powerpc, darwin6.8
status
major1
minor9.0
year 2004
month04
Hello,
Use the function xYplot from hmisc package
cheers,
Marta
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PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
On Mon, 2004-09-06 at 20:18, Gavin Simpson wrote:
> Dear list,
>
> I'm having a problem configuring R-1-9-patched on a Intel Xeon machine
> running Fedora Core 2. I used svn to checkout the source, altered
> config.site to add some optimisation flags to match the Fedora rpm on
> CRAN (the flags
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