[R] Odd behaviour of R 2.00

2004-11-13 Thread Hiroto Miyoshi
Dear R users (B (BI have a data frame containing character and numeric variables, whose (Bname is seishin. When I tried to assign NA to "" in the data frame, R, 2.00 (Bshowed an error message, such as (B (B> seishin[seishin==""]<-NA (BError: NAs are not allowed in subscripted assignments (

Re: [R] Calling Other (non-C or Fortran) Programs from R

2004-11-13 Thread Tim F Liao
Here's my report on the issue: The command 'system' combined with either 'scan' or 'read.table' (depending on what I want to do with the output in each step) worked beautifully. Cheers, Tim Liao __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch

Re: [R] dyn.load problem

2004-11-13 Thread O. Neto
Hi, Uwe. Thank you for help. Yesterday another R-user Mr. Ramasamy told me to do a simple program such as (changing too the directories, now C:/minhadll/): /*file conv.c*/ #include void printhello (){ Rprintf("%s", "hello world\n"); } When I use C:\R\rw2000\bin>RCMD SHLIB -o c:/

Re: [R] Thrashing?

2004-11-13 Thread Prof Brian Ripley
On Sat, 13 Nov 2004, Rob Steele wrote: Does R do its own swapping out to disk? I disabled Linux swapping and the No. system still gets stuck in Purgatory where there's little CPU activity but the disk goes like crazy. That's with R having almost the whole machine to itself and running a memory

Re: [R] Setting plots margin

2004-11-13 Thread Uwe Ligges
Anne Piotet wrote: I have a problem with plot for summary s<-summary(response~ x1+x2+x3+x4+x5+x6+x7+ + x8+ x9+x10) plot(s) Error in plot.new() : Figure margins too large I tried to set the margins to null with par(mai=c(0,0,0,0)) but keep getting the same error message What is wrong? Anne,

Re: [R] expressions and paste

2004-11-13 Thread Uwe Ligges
Emily Baldock wrote: I am trying to get a subscript into the title. My expression is quote(bold(apoA[bold("1")])) I have managed to get something near to what I want with sd2 <-1.882 measure <- "g/L" direction <- "increase" chem <- quote(bold(apoA[bold("1")])) plot(0,0) titletxt <- substitute(pas

Re: [R] dyn.load problem

2004-11-13 Thread Uwe Ligges
O. Neto wrote: Hi R-Users I wrote 1 week ago asking about a message that appears when I try run dyn.load. I'm trying to do an example in C code from "Writing R Extension" to learn how to do it. I have R 2.0.0, Rtools, Perl and MinGW as describe in http://www.murdoch-sutherland.com/Rto

[R] Thrashing?

2004-11-13 Thread Rob Steele
Does R do its own swapping out to disk? I disabled Linux swapping and the system still gets stuck in Purgatory where there's little CPU activity but the disk goes like crazy. That's with R having almost the whole machine to itself and running a memory hungry compute only function. I've seen t

Re: [R] density estimation: compute sum(value * probability) for given distribution

2004-11-13 Thread Uwe Ligges
bogdan romocea wrote: Dear R users, This is a KDE beginner's question. I have this distribution: length(cap) [1] 200 summary(cap) Min. 1st Qu. MedianMean 3rd Qu.Max. 459.9 802.3 991.6 1066.0 1242.0 2382.0 I need to compute the sum of the values times their probability of oc

Re: [R] Variance and Covariance Matrix D and R in nlme or lme4 part II [Please]

2004-11-13 Thread Douglas Bates
Alexandre Galvão Patriota wrote: Hi Douglas, I need to find the matrix V=ZDZ'+R, for example: require(nlme) data(Orthodont) attach(Orthodont) fm1 <- lme(distance ~ age + Sex, data = Orthodont,random=~age) X<-model.matrix(distance ~ age + Sex) Z<-model.matrix(distance ~ age + Subject -1) D<-diag(nco

[R] Variance and Covariance Matrix D and R in nlme or lme4 part II [Please]

2004-11-13 Thread Alexandre Galvão Patriota
Hi Douglas, I need to find the matrix V=ZDZ'+R, for example: require(nlme) data(Orthodont) attach(Orthodont) fm1 <- lme(distance ~ age + Sex, data = Orthodont,random=~age) X<-model.matrix(distance ~ age + Sex) Z<-model.matrix(distance ~ age + Subject -1) D<-diag(ncol(Z)) cova<-VarCorr(fm1,rdig=7)

Re: [R] R on 64-bit Linux machine

2004-11-13 Thread Peter Dalgaard
Prof Brian Ripley <[EMAIL PROTECTED]> writes: > > [EMAIL PROTECTED]:~/r-devel> echo > > 'set.seed(1);M<-matrix(rnorm(9e6),3e3);system.time(solve(M))' | > > BUILD-GOTO/bin/R -q --vanilla > >> set.seed(1);M<-matrix(rnorm(9e6),3e3);system.time(solve(M)) > > [1] 29.12 1.39 32.21 0.00 0.00 > >> >

Re: [R] determing the distribution of a sample data set etc..

2004-11-13 Thread Prof Brian Ripley
On Sat, 13 Nov 2004, Ann Huxtable wrote: Hello, I have only recently started using R. I have two data samples that I want to carry out some initial explorative data analysis to: i). Determine the distribution of the data ii). Determine whether both datasets are from the same distribution. I have

Re: [R] Variance and Covariance Matrix D and R in nlme or lme4 part II

2004-11-13 Thread Douglas Bates
Alexandre Galvão Patriota wrote: The model is Y = XB + Zg + e where g~N(0, D) e~N(0, R) How to extract the VAR(g)= D, VAR(e)=R and V=ZDZ'+R? thanks The VarCorr function can provide D. __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo

Re: [R] R on 64-bit Linux machine

2004-11-13 Thread Prof Brian Ripley
On Sat, 13 Nov 2004, Peter Dalgaard wrote: Peter Dalgaard <[EMAIL PROTECTED]> writes: Prof Brian Ripley <[EMAIL PROTECTED]> writes: ATLAS, you need to build shared ATLAS libraries (rather than static). This requires some modifications to the configuation files for ATLAS. But my experience shows t

RE: [R] density estimation: compute sum(value * probability) for given distribution

2004-11-13 Thread bogdan romocea
Andy, Thanks a lot for the clarifications. I was running a simulation a number of times and trying to come up with a number to summarize the results. And, I failed to realize from the beginning that what I was trying to compute was just the mean. Regards, b. --- "Liaw, Andy" <[EMAIL PROTECT

Re: [R] R on 64-bit Linux machine

2004-11-13 Thread Peter Dalgaard
Peter Dalgaard <[EMAIL PROTECTED]> writes: > Prof Brian Ripley <[EMAIL PROTECTED]> writes: > > > > ATLAS, you need to build shared ATLAS libraries (rather than > > > static). This requires some modifications to the configuation files > > > for ATLAS. But my experience shows that R itself builds

[R] determing the distribution of a sample data set etc..

2004-11-13 Thread Ann Huxtable
Hello, I have only recently started using R. I have two data samples that I want to carry out some initial explorative data analysis to: i). Determine the distribution of the data ii). Determine whether both datasets are from the same distribution. I have managed to create unit probability histog

RE: [R] density estimation: compute sum(value * probability) for given distribution

2004-11-13 Thread Liaw, Andy
First thing you probably should realize is that density is _not_ probability. A probability density function _integrates_ to one, not _sum_ to one. If X is an absolutely continuous RV with density f, then Pr(X=x)=0 for all x, and Pr(a < X < b) = \int_a^b f(x) dx. sum x*Pr(X=x) (over all possible

Re: [R] Firefox keyword searches for R & S-Plus

2004-11-13 Thread Romain François
Dear wizaRds, Kevin, I came up with a solution to perform a r doc search in the Firefox search bar, you'll have to create a file called R.src in the search plugins directory : (for me it is : C:/Program Files/Mozilla Firefox/searchplugins) and put a png image of the R logo in the same directo

Re: [R] How to get mode (the most frequent value in distribution)?

2004-11-13 Thread Ales Ziberna
Maybe a litle simpler solution: x<-rnorm(50) den<-density(x) #see ?density for more details den$x[which(den$y==max(den$y))] Hope it helps, Ales Ziberna - Original Message - From: "Gregor GORJANC" <[EMAIL PROTECTED]> To: <[EMAIL PROTECTED]> Sent: Friday, November 12, 2004 6:38 PM Subject

Re: [R] unavoidable loop? a better way??

2004-11-13 Thread Prof Brian Ripley
Ah, that is now a recursive linear filter. In fact filter() would do both your examples. On Sat, 13 Nov 2004, James Muller wrote: Take 3: # p is a vector myfunc <- function (p) { x <- rep(0,length(p)) x[1] <- p[1] for (i in c(2:length(p))) { x[i] <- 0.8*p[i] + 0.2*x[i-1] # note the x