On Fri, 25 Feb 2005, Henrik Bengtsson wrote:
.Primitive() does not necessarily apply non-S3 generic function, cf.
as.character().
You mean `imply'? In fact "+" *is* S3 generic and has methods defined:
methods("+")
[1] +.Date +.POSIXt
It is also group-generic, part of the Ops group with many more
Carsten Steinhoff wrote:
> Hi,
>
> I've made a function that executes a monte-carlo simulation.
> It always needs a lot of time until e.g. 1Mio simulation steps are done.
> So I would like to know, how many percent of the work is already done.
>
> In an Excel/VBA Solution I could easily implement a
oops,
Forgot to cc to the list.
Regards,
Mike
-Original Message-
From: dr mike [mailto:[EMAIL PROTECTED]
Sent: 24 February 2005 19:21
To: 'Spencer Graves'
Subject: RE: [R] Bayesian stepwise (was: Forward Stepwise regression based
onpartial F test)
Spencer,
Obviously the problem is on
Hi ,
I was trying read in an affy array/matrix and then to calculate the mean value
for all the duplicates. Is there a function in the R package that would do this?
I tried the help function and searched for 'duplicate'. Although it provides a
list of functions that would eliminate the duplic
Hello,
I am trying to use PrinComp to do principle component analysis. I
would like to know how to set the number of principle components.
Thanks in advance.
Best Regards,
WeiQiang Li
IT-FIS Development
Tel: 6485-2439
[[alternative HTML version deleted]]
__
Spencer Graves wrote:
Does anyone know of research fully Bayesian stepwise procedures
assuming that models not considered by the stepwise would essentially
have zero posterior probability?
I need to analyze the results of ad hoc experiments run in
manufacturing with crazy confounding a
array chip yahoo.com> writes:
:
: Hi,
:
: I am just a little confused of mian effect in the
: analysis of variance (ANOVA) when you include or do
: not include an interaction term. Let's assume a simple
: case of 2-way ANOVA with 2 factors A and B, each with
: 2 levels. If it shows that main ef
On Thursday 24 February 2005 04:13, Adrian Dusa wrote:
> ...
You need to check your font installation. Be sure the X-11 fonts are
installed.
XFree86-fonts-75dpi-4.3.99.902-30
XFree86-fonts-100dpi-4.3.99.902-30
Should both be on your system. If they aren't bring up the YaST control
center
array chip <[EMAIL PROTECTED]> writes:
> Hi,
>
> I am just a little confused of mian effect in the
> analysis of variance (ANOVA) when you include or do
> not include an interaction term. Let's assume a simple
> case of 2-way ANOVA with 2 factors A and B, each with
> 2 levels. If it shows that ma
Hi,
I've made a function that executes a monte-carlo simulation.
It always needs a lot of time until e.g. 1Mio simulation steps are done.
So I would like to know, how many percent of the work is already done.
In an Excel/VBA Solution I could easily implement a status bar or status
window.
How co
.Primitive() does not necessarily apply non-S3 generic function, cf.
as.character().
An options is to do
"+" <- function(...) UseMethod("+")
"+.default" <- .Primitive("+")
"+.character" <- function(...) paste(...,sep="")
"abc" + "def" + "ghi"
# [1] "abcdefghi"
The question is if you want to do
Hi,
I am just a little confused of mian effect in the
analysis of variance (ANOVA) when you include or do
not include an interaction term. Let's assume a simple
case of 2-way ANOVA with 2 factors A and B, each with
2 levels. If it shows that main effect for A is
significant when the interaction be
?coef should do the trick.
-Original Message-
From: mingan [mailto:[EMAIL PROTECTED]
Sent: Thursday, February 24, 2005 5:12 PM
To: r-help@stat.math.ethz.ch
Subject: [R] help: how to get coefficients from the result
I am using timereg and Survreg packages
below is the output, but h
> "Gabor" == Gabor Grothendieck <[EMAIL PROTECTED]>
> on Fri, 18 Feb 2005 02:55:15 + (UTC) writes:
Gabor> Michael Grottke duke.edu>
Gabor> writes: : I am currently using R for fitting a model
Gabor> to various data sets : (minimizing the negative
Gabor> log-likelih
Dear all,
I have uploaded a new package called micEcon (version 0.1-3) to CRAN
(an early version of this package has been already presented at useR! 2004).
It contains tools for microeconomic analysis and microeconomic modeling.
These are for instance:
- tools for demand analysis with the 'Almos
On Thu, 24 Feb 2005, Berton Gunter wrote:
I was hoping that one of the R gurus would reply to this, but as they have't
(thus far) I'll try. Caveat emptor!
First of all, R passes function arguments by values, so as soon as you call
foo(val) you are already making (at least) one other copy of val for
I am using timereg and Survreg packages
below is the output, but how can I get the coefficient for zt1 zt2
directly,
that is how can I get 0.000946 and 0.963000 directly ?
I tried out$coeff[1,1] or sth. similar, but does not work
since I will run a simulation of several thousand, so I should g
Jan Bulla wrote:
> I am looking for an efficient way to compute the
> values of the density function of a multivariate T
> distribution - something like "dmvnorm", but for T
> distr. Does this exist somewhere?
Searching CRAN I found the ``sn'' package which includes the function
dmst() which cal
Thanks to both Robert McGehee and Andy Liaw for their informative
(and quick) replies.
Best Wishes,
spencer graves
McGehee, Robert wrote:
Not without extending character to another class. If you try to define
this "+" method using S4, you get a proper error indicating that
additio
I was hoping that one of the R gurus would reply to this, but as they have't
(thus far) I'll try. Caveat emptor!
First of all, R passes function arguments by values, so as soon as you call
foo(val) you are already making (at least) one other copy of val for the
call.
Second,you seem to implicitly
I believe not, because:
> get("+")
.Primitive("+")
i.e., it's not an S3 generic.
Andy
> From: Spencer Graves
>
> Can we do something to make the following work:
>
> > "+.character" <- function(x,y) paste(x,y,sep="")
> > "abc"+"def"
> Error in "abc" + "def" : non-numeric argument to b
Not without extending character to another class. If you try to define
this "+" method using S4, you get a proper error indicating that
addition over characters is not allowed.
> setMethod("+", signature("character", "character"),
function(e1,e2) paste(e1,e2, sep = ""))
Error in
Please report bugs in contributed R packages to the packages'
maintainers, in this case Alvaro A. Novo (in CC).
Uwe Ligges
Andreas Wolf wrote:
dear list members,
there seems to be a problem with the prelim.norm function (package norm)
as number of items in the dataset increases.
the output of pre
Can we do something to make the following work:
> "+.character" <- function(x,y) paste(x,y,sep="")
> "abc"+"def"
Error in "abc" + "def" : non-numeric argument to binary operator
Thanks,
spencer graves
Gabor Grothendieck wrote:
Harris A. Jaffee jhmi.edu> writes:
: Why doesn't R hav
> -Original Message-
> From: Thomas Lumley [mailto:[EMAIL PROTECTED]
> You want capture.output().
Thank you! This is exactly what I needed.
efg
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do re
To answer your question: I don't think it matters.
If you're willing to use FSG Emacs instead of XEmacs, I repackaged Emacs 21.3
for Windows together with recent versions of ESS and AuCTeX for my students
(I personally run Linux). The package and installation instructions are at:
http://vgoule
Hi,
I am looking for an efficient way to compute the
values of the density function of a multivariate T
distribution - something like "dmvnorm", but for T
distr. Does this exist somewhere?
Many thanks,
Jan Bulla
Goettingen University
__
R-help@stat.m
On Thu, 24 Feb 2005, Earl F. Glynn wrote:
Why does this NOT work?
typeof(logicfit)
[1] "list"
class(logicfit)
[1] "logreg"
x <- paste(print(logicfit))
score 0.968
+2.14 * (((not X4) or ((not X13) and X19)) and (not X3)) -1.25 * not
X1) or (not X3)) and ((not X2) or X20)) and (((not X17) and X16
Harris A. Jaffee jhmi.edu> writes:
: Why doesn't R have one, like "." in Perl or juxtaposition in awk?
You could define one like this:
R> "%+%" <- function(x,y) paste(x,y,sep="")
R> "abc" %+% "def"
[1] "abcdef"
__
R-help@stat.math.ethz.ch mailing li
Perhaps I can ask a more focused question:
"Earl F. Glynn" <[EMAIL PROTECTED]> wrote in message
news:[EMAIL PROTECTED]
> I want to get some "simple" logic regression examples to work before
> exploring a hard problem.
..
> logicfit <- logreg(resp=Y, bin=X,
>type = REGRESSION.TY
Why doesn't R have one, like "." in Perl or juxtaposition in awk?
It does not seem impossible to introduce one, if that would be
reasonable. It would seem to involve adding a table entry to
main/names.c for the binary operator and a corresponding internal
function, say do_dot(). This cannot be s
Do you want the boxplots to be in the same panel, or different panels, but
the same page/window? If the former, it's probably easiest to construct a
data frame that will let you use bwplot to put them in the same panel. If
the latter, see the help page for print.trellis on how you can place sever
I currently have 3 separate boxplots but would like to put them all in the
graphic so they would have the same scale. Below are the three statements
and as you can see the Y axis is weight:
bwplot(AWGT~ male2
bwplot(AWGT ~ bin_pcb2 .
bwplot(AWGT ~ bin_pcb2 | male2 .
Does anyone hav
I am using environments to avoid making copies (by keeping references).
But it seems like there is a hidden copy going on somewhere - for
example in the code fragment below, I am creating a reference to "y"
(of size 500MB) and storing the reference in object "data". But when I
save "data" and the
Using the data set posted at
http://uwstudentweb.uwyo.edu/A/AKNISS/sbxherb.txt
I obtained this output from R:
> data(sbxherb)
> attach(sbxherb)
> sbxherb$rep<-factor(c("I","II","III"))
> sbxherb$var<-factor(sbxherb$var)
> sbxherb$trt<-factor(sbxherb$trt, labels=c("Check","Early","Late","Micro"))
On Thursday 24 February 2005 08:03, Petr Pikal wrote:
> Dear all
>
> I solved a problem of customised labels on strips and boxes in bwplot
> by this construction.
>
> > bbb <- bwplot(zavoj ~ typmleti | pu)
> > bbb$condlevels$pu <- c("Povrchová úprava", "Bez PU")
> > bbb$x.limits <- c("Mleto", "Mlet
On Thu, 24 Feb 2005 10:36:21 -0700, "Christian J. Caruso"
<[EMAIL PROTECTED]> wrote :
>
>When using circ.summary is it is necessary to convert radian data? I
>have run circ.summary and it reports an n of 1 when I have 2620 points.
You need to give more details. What package is circ.summary in?
When using circ.summary is it is necessary to convert radian data? I
have run circ.summary and it reports an n of 1 when I have 2620 points.
Thanks,
Chris
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do re
Does anyone know of research fully Bayesian stepwise procedures
assuming that models not considered by the stepwise would essentially
have zero posterior probability?
I need to analyze the results of ad hoc experiments run in
manufacturing with crazy confounding and possible supersat
On Thursday 24 February 2005 06:12, Gesmann, Markus wrote:
> Dear R-users
>
> I have some trouble to generate more than one key with xyplot using
> the legend argument.
> I would like one key with rectangles:
>
> library(lattice)
> library(grid)
> key1 <- list(rectangles = list(col= c(rev(heat.colo
Greetings. Is it possible to extract the model matrix (Z) for the random
effects from an lme object? For example, assume the model has two levels of
random effects as in:
Y = XB + Zu + e
model.matrix() gives the matrix X only. For example:
> tt<-model.matrix(distance~age, Orthodont, random=
On Thu, 24 Feb 2005, Roger Dungan wrote:
Dear r-help subscribers,
A couple of weeks ago I sent the following message to the r-help mail
list. It hasn't generated any response, and I could really use some help
on this. Anyone able to help?
You can't easily fit a gamma distribution with survreg() unl
Hi, All,
I use RGtk and Rtcltk to build some graphical interface for
bioinformatics data analysis applications.
I'm just wondering why the graphic display is so slow. For example, I
tried to build a 2000 rows & 5 levels tree with both Rgtk and Rtcltk.
RGtk cost about 15 seconds and Rtcltk about
- Original Message -
From: "Feng Chen" <[EMAIL PROTECTED]>
To: "Uwe Ligges" <[EMAIL PROTECTED]>
Sent: Thursday, February 24, 2005 9:52 PM
Subject: Re: [R] a question about function eval()
Dear Uwe,
Thanks for your advice. As you may have noticed, I am a newbie to R and
not fully aware o
Dear all
I solved a problem of customised labels on strips and boxes in bwplot
by this construction.
> bbb <- bwplot(zavoj ~ typmleti | pu)
> bbb$condlevels$pu <- c("Povrchová úprava", "Bez PU")
> bbb$x.limits <- c("Mleto", "Mleto a sítováno", "Nemleto")
> bbb
but I wonder if some other easy op
On Thu, 24 Feb 2005, Adrian Dusa wrote:
Prof Brian Ripley stats.ox.ac.uk> writes:
On Tue, 22 Feb 2005 Cedric.Ginestet tvu.ac.uk wrote:
The R platform that I installed on my Windows XP crashes everytime that
I try to run some sophisticated graphics (e.g. Demo Graphics). Is that
to do with the conf
Robin,
You may see leaps() (package leaps). It deals with all subsets regression
considering several chosen criteria.
beste Regards,
Alex
models -- Início da mensagem original ---
De: [EMAIL PROTECTED]
Para: "Smit, Robin" [EMAIL PROTECTED]
Cc: r-help@stat.math.ethz.ch
Data: T
hi all
i worked it out. the following code seems to work. thanx for those who
replied to previous questions.
simple1<-function(xdata,ydata)
{
DATA<-data.frame(ydata,xdata)
ofit<-summary(lm(ydata~.,data=DATA))
list(ofit)
}
simple1(x,y)
> simple1(x,y)
[[1]]
Call:
lm(form
probably D (it would be better not to use D since this is reserved for
an R function) is a data.frame and thus also
x <- D[,1:2]
is a data.frame!
try this:
D <- data.frame(x1=1:3, x2=c(1,6,10), y=c(10,6,7)) # your data.frame
D. <- data.matrix(D)
x <- D.[,1:2]
y <- D.[,3]
simple1 <- function(xdata
hi
i still get the same error. i must be doing something wrong. i have
typed in all of the steps i used.
D
x1 x2 y
1 1 1 10
2 2 6 6
3 3 10 7
x<-D[,1:2]
y<-D[,3]
> x
x1 x2
1 1 1
2 2 6
3 3 10
> y
[1] 10 6 7
> simple1 <- function(xdata, ydata){
+ ofit <- substitute(lm(ydat
Prof Brian Ripley stats.ox.ac.uk> writes:
>
> On Tue, 22 Feb 2005 Cedric.Ginestet tvu.ac.uk wrote:
>
> > The R platform that I installed on my Windows XP crashes everytime that
> > I try to run some sophisticated graphics (e.g. Demo Graphics). Is that
> > to do with the configuration? Shall I
Dear R-users
I have some trouble to generate more than one key with xyplot using the
legend argument.
I would like one key with rectangles:
library(lattice)
library(grid)
key1 <- list(rectangles = list(col= c(rev(heat.colors(5))[1:5],
rev(heat.colors(5))[4:1])),
Smit, Robin wrote:
I am hoping to get some advise on the following:
I am looking for an automatic variable selection procedure to reduce the
number of potential predictor variables (~ 50) in a multiple regression
model.
I would be interested to use the forward stepwise regression using the
part
Feng Chen wrote:
Hi,
I have a question about the usage of eval(). Wonder if any experienced user can
help me out of it.
I use eval() in the following function:
semireg.pwl <-
function(coef.s=rnorm(1),coef.a=rnorm(1),knots.pos=knots.x,knots.ini.val=knots.val){
knotn <- length(knots.pos)
def.pa
dear list members,
there seems to be a problem with the prelim.norm function (package norm)
as number of items in the dataset increases.
the output of prelim.norm() is a list with different summary statistics,
one of them is the missingness indicator matrix "r". it lists all
patterns of missing da
Dear Stefan
I need to apply a Mann Whitney test to my data, by applying a bootstrap, in
R.
Loonkig for an answer in internet I found your question to the R mailing
list but I have not found the answer to your question.
Please, could you help me?
thank you very much in advance.
Best regards
Luciana
Hi,
I was wondering if someone of you has functions ready
for calculating the modified allan variance / modified
allan variation from a time series? I can't find such a
function coming with the stock (Debian) R package.
Thanks,
Tom
__
R-help@stat.math.
On Wed, 23 Feb 2005 11:52:26 +0100, "Ritter, Christian C
GSMCIL-GSTMS/2" <[EMAIL PROTECTED]> wrote :
>Has anyone seen an official announcement to DSC-2005.
It's just been posted to R-devel; you can see it online at
http://tolstoy.newcastle.edu.au/R/devel/05/02/2326.html
Duncan Murdoch
___
On Wed, Feb 23, 2005 at 09:14:50PM -0500, rif wrote:
> This does not do what the matlab code I posted does (the matlab code
> also works in the free program octave, if you want to try). The
> matlab code moves already plotted data within the window (replots it).
> When I first type plot(1:10,1:10
Sander Oom wrote:
Hi Ernst,
Pretty soon some one is going to: 1) tell you that the mailing list is
in English, 2) that you should provide more details of your data and 2)
that your message should show signs that you have read the posting guide
and have searched the help documentation in a first
I am hoping to get some advise on the following:
I am looking for an automatic variable selection procedure to reduce the
number of potential predictor variables (~ 50) in a multiple regression
model.
I would be interested to use the forward stepwise regression using the
partial F test.
I have
Hi Ernst,
Pretty soon some one is going to: 1) tell you that the mailing list is
in English, 2) that you should provide more details of your data and 2)
that your message should show signs that you have read the posting guide
and have searched the help documentation in a first attempt to find th
Hi
Perhaps write.table(, row.names=FALSE)
Cheers
Petr
On 23 Feb 2005 at 15:39, [EMAIL PROTECTED] wrote:
> Dear all,
>
> Is it possible to print a dataframe without the row numbers?
> For example if I have a dataframe like that:
> >df <-
> >data.frame(name1=sample(LETTERS,10),name2=samp
There was a similar question about one week ago regarding the use of
"table(x,y)". One approach could be to use the following:
simple1 <- function(xdata, ydata){
ofit <- substitute(lm(ydata~xdata))
list(eval.parent(ofit))
}
#
simple1(xdata=x, ydata=y)
lm(y~x)
I hope it helps.
Be
Hello,
I have no errors with simple1:
d <- matrix(c(1,2,3,1,6,10,10,6,7),ncol=3)
colnames(d) <- c("one", "two", "three")
x<- d[,c(1,2)]
y<-d[,3]
> y
[1] 10 6 7
> simple1(x,y)
[[1]]
Call:
lm(formula = ydata ~ xdata)
Coefficients:
(Intercept) xdataone xdatatwo
-6
ich hätte ein problem: im rahmen meiner projektarbeit stehe ich vor der
aufgabe, einen beliebigen datensatzt einzulesen, die empirische
verteilungsfunktion des datensatztes zu zeichnen, aber das ganze so, dass die
y-achse nach der quantilsfunktion der exponetialverteilung mit parameter=1
transf
There was a packaging error. A new RPM version is on its way to CRAN.
Thanks.
Martyn
On Wed, 2005-02-23 at 21:35 -0500, John Sorkin wrote:
> I am having problems installing R under Fedora Core 3. I installed R
> using YUM
> yum -install R.
> The basic installation appears to have worked, I can s
hi all
i have a function that uses two inputs, say xdata and ydata. An example
is the following,
simple1<-function(xdata,ydata)
{
ofit<-lm(ydata~xdata)
list(ofit)
}
say i use arbitray number for xdata and ydata such that
D =
x1 x2 y
1 1 10
2 6
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