[R] configure: WARNING: you cannot build info or HTML versions of the R manuals

Rusers, I am trying to build R2.5 on my Kubuntu machine an configure concludes with : configure: WARNING: you cannot build info or HTML versions of the R manuals What do I need to install on my machine to get rid of this warnings? Eryk [[alternative HTML version deleted]]

[R] tcltk support....

Rusers, library(Rcmdr) Loading required package: tcltk Error in firstlib(which.lib.loc, package) : Tcl/Tk support is not available on this system While installing R I run configure with configure --prefix=/bla/bla --with-tcltk make make install configure did not returned any errors.

Re: [R] configure: WARNING: you cannot build info or HTML versions of the R manuals

Texinfo. Not sure if that is also the package name on *ubuntu/debian. It's called texinfo on ubuntu/debian and it fixed the problem. Thanks a lot Peter. Eryk [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list

Re: [R] tcltk support....

that some packages on my system are missing. cheers Eryk On 4/26/07, Stefan Grosse [EMAIL PROTECTED] wrote: tcltk must be installed on your system, it is not a R package. Which Linux are you using? W Eryk Wolski wrote: Rusers, library(Rcmdr) Loading required package: tcltk Error

[R] Translating actxserver server commands to rcom

Dear R and R com user I have the following matlab which acesses a com server, code which I am trying to translate to R using the Rcom package: clear all; clear analysis; analysis = actxserver('EDAL.MSAnalysis');

Re: [R] Problem with memory footprint of qq plot generated with lattice

Dave, qqmath(~val|ind,data=xx ,distribution=function(p) qt(p,df=19) ,ylab=Sample Quatinles ,xlab=Theoretical Quantiles ,aspect=1 ,prepanel = prepanel.qqmathline ,panel=function(x,y) { panel.qqmathline(y, distribution=function(p)

Re: [R] regression methods for circular(?) data.

Hi, I do not know the intercept and slope. And you have to know them in order to do something like: ix-(y 0.9*(x-50)/200 I am right? cheers (Ted Harding) wrote: On 26-Sep-05 nwew wrote: Dear R-users, I have the following data x - runif(300,min=1,max=230) y - x*0.005 + 0.2 y -

Re: [R] regression methods for circular(?) data.

(Ted Harding) wrote: On 26-Sep-05 Witold Eryk Wolski wrote: Hi, I do not know the intercept and slope. And you have to know them in order to do something like: ix-(y 0.9*(x-50)/200 I am right? cheers Although I really knew them from the way you generated the data, I pretended I did

Re: [R] Interaction term in anova - how it should be written in a manuscript table?

, Liaw, Andy wrote: I'd suggest a $\times$ b, as you'd find in most stat textbook. Andy From: Witold Eryk Wolski Dear Rgurus, Interaction terms in the linear models function lm are specified by the colon : eg: x ~ a + b + a:b a shortcut for the above is: x ~ a*b the output if calling anova

[R] Violin plot for discrete variables.

. Maybee I should ask it first: Does such a plot make any sense? If not are there better solutions? cheers Eryk. -- Witold Eryk Wolski __( School of Mathematics and Statistics _ \__/ University of Newcastle 'v' ||Newcastle upon Tyne, NE1 7RU, ENGLAND / \ ^^mail

[R] Interaction term in anova - how it should be written in a manuscript table?

Dear Rgurus, Interaction terms in the linear models function lm are specified by the colon : eg: x ~ a + b + a:b a shortcut for the above is: x ~ a*b the output if calling anova on the lm object will be the same in both cases a b a:b ... Resdiuals ... What I am wondering is how the

Re: [R] Concatenate vector into string

-project.org/posting-guide.html paste( c(a,b,c),collapse=) Eryk -- Witold Eryk Wolski __( School of Mathematics and Statistics _ \__/ University of Newcastle 'v' ||Newcastle upon Tyne, NE1 7RU, ENGLAND / \ ^^mail: [EMAIL PROTECTED] m m Phone : 044 (0)191 222

[R] Hot to _set_ an xmlAttr XML xmlAttr set

? Eryk -- Witold Eryk Wolski __( School of Mathematics and Statistics _ \__/ University of Newcastle 'v' ||Newcastle upon Tyne, NE1 7RU, ENGLAND / \ ^^mail: [EMAIL PROTECTED] m m Phone : 044 (0)191 222 5376 FAX : 044 (0)191 222 8020

Re: [R] Need suggestions for plotting 3D plot

@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Witold Eryk Wolski __( School of Mathematics and Statistics _ \__/ University of Newcastle 'v' ||Newcastle upon Tyne, NE1

Re: [R] Renaming columns in data.frame, inserting/removing columns from data.frame

https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __(_ http://www.molgen.mpg.de/~wolski

Re: [R] Need your help with my R plot

read the posting guide! http://www.R-project.org/posting-guide.html Hi, Take a look at the function: ixyplot in the package IDPmisc. Eryk -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __(_ http

Re: [R] S4 class no longer accepts matrix in array slot under 2.0.1

@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219

Re: [R] scatterplot of 100000 points and pdf file format

Prof Brian Ripley wrote: On Wed, 24 Nov 2004 [EMAIL PROTECTED] wrote: On 24-Nov-04 Witold Eryk Wolski wrote: Hi, I want to draw a scatter plot with 1M and more points and save it as pdf. This makes the pdf file large. So i tried to save the file first as png and than convert it to pdf. This looks

[R] scatterplot of 100000 points and pdf file format

to reduce the size but keep the quality? /E -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __(_ http://www.molgen.mpg.de/~wolski \__/'v' http://r4proteomics.sourceforge.net||/ \ mail: [EMAIL

Re: [R] scatterplot of 100000 points and pdf file format

=n) mtext(expression(m[nominal]),side=1,line=2) mtext(expression(mod(m[monoisotopic],1)),side=2,line=2) legend(1000,4,expression(paste(lambda[DB],=,0.000495)),col=2,lty=1,lwd=1) abline(test,col=2,lwd=2) dev.off() Marc Schwartz wrote: On Wed, 2004-11-24 at 16:34 +0100, Witold Eryk Wolski wrote

Re: [R] scatterplot of 100000 points and pdf file format

in BioC was there for this purpose: avoid heavy over-plotting lots of points. You might want to look into that, if you have not done so yet. Best, Andy From: Marc Schwartz On Wed, 2004-11-24 at 16:34 +0100, Witold Eryk Wolski wrote: Hi, I want to draw a scatter plot with 1M and more points

Re: [R] R/S-related projects on Sourceforge? Trove Categorization

Hi, This are the project which I have extracted from all your mails. 1. http://sourceforge.net/projects/rpgsql/ R PostgreSQL Interface 2. http://sourceforge.net/projects/r-spatial/ R package for spatial data classes 3. http://sourceforge.net/projects/rpy/ RPy (R from Python) 4.

[R] R/S-related projects on Sourceforge? Trove Categorization

://sourceforge.net/tracker/?func=detailatid=350001aid=967697group_id=1 -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __(_ http://www.molgen.mpg.de/~wolski \__/'v' http://r4proteomics.sourceforge.net

Re: [R] - assignment no long work in class methods

://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __(_ http://www.molgen.mpg.de/~wolski

[R] How to add values to an array at any position.

) of the result vector. /E -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __(_ http://www.molgen.mpg.de/~wolski \__/'v' http://r4proteomics.sourceforge.net||/ \ mail: [EMAIL PROTECTED

Re: [R] How to add values to an array at any position.

Hi, In the first place I was wondering if there are no function _insert.vector_ in base. Thanks Peter and Gabor even for the bad news. E. Peter Dalgaard wrote: Witold Eryk Wolski [EMAIL PROTECTED] writes: Hi, How to add values to an array at any position. Asking because of the following: e.g

Re: [R] usage and behavior of 'setIs'

] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __(_ http://www.molgen.mpg.de

Re: [R] Intro to R: lecture presentation

__ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219

[R] plot.dendrogram and plot.hclust ZOOM into the height?

to show the tree only for the height of 1e10+-5000 but unfortunately their are no parameter like xlim,ylim in the function? Are there other ways to ZOOM? Any suggestions? /E -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219

[R] Re: plot.dendrogram and plot.hclust ZOOM into the height?

Hi, Just noted that dendr2 - cut(dendr1,h=1) plot(dendr2$upper) Gives what I am looking for. Sorry, Its quite late here. /E Witold Eryk Wolski wrote: Hi, I clustered a distance matrix and would like to draw it using plot.hclust or plot.dendrogram. The dendrogram is not informative because I

Re: [R] C/C++

/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __(_ http://www.molgen.mpg.de/~wolski \__/'v' http

Re: [R] colClasses

version deleted]] __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse

Re: [R] R-(wiki)-pedia?

. __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin _ tel: 0049-30-83875219

[R] setClass - equvalent declarations?

,matrix,representation(names=character)) [1] MVE Warning message: prototype is a list with named elements (could be ambiguous): better to use function prototype() to avoid trouble. in: reconcilePropertiesAndPrototype(name, slots, prototype, superClasses, /E. -- Dipl. bio-chem. Witold Eryk

Re: [R] Reading multiple files into R

-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin _ tel: 0049-30-83875219 'v' http://www.molgen.mpg.de/~wolski / \ mail: [EMAIL PROTECTED] ---W-W [EMAIL PROTECTED

Re: [R] Rnewsletter article example

. __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195

Re: [R] function by

/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin _ tel: 0049-30-83875219 'v' http://www.molgen.mpg.de/~wolski / \ mail: [EMAIL PROTECTED] ---W-W [EMAIL PROTECTED

Re: [R] Is there any way to release memory in running time?

__ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin

Re: [R] add-on packages

! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin _ tel: 0049-30-83875219 'v' http://www.molgen.mpg.de/~wolski / \ mail: [EMAIL PROTECTED] ---W-W [EMAIL

Re: [R] slow loops in Monte Carlo Simulations

Department of Econometrics University of Muenster Germany __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski

Re: [R] S4 method selection based on second argument

://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin _ tel: 0049-30-83875219 'v' http://www.molgen.mpg.de/~wolski

Re: [R] using text on the x axis ticks rather than numbers

Hi! first supress axis drawing with param axes=FALSE in your plot function. The use axis function to add your axes. ?axis /E On Tue, 7 Sep 2004, Rajarshi Guha wrote: Hello, is there a way in which I can use text labels rather than numbers on the x axis ticks? I basically have a vector of

Re: [R] Accesing the name of an assigned object in a function

?assign /E On Wed, 1 Sep 2004, Henrik Andersson wrote: I want to use the name that I assign to an object in the function that produces the output, somewhat like below: stupid.function - function(input){ [body] cat(Summarized output is , output$summary, Full output is

[R] 'Math' group generic functions. Cant explain behaviour of 'log'.

Hi! Out of all 'Math' group generic functions(?Math) the log function has a different behaviour. See example bellow. Whats the reason? Platfom Windows 2000. R : Copyright 2003, The R Foundation for Statistical Computing Version 1.8.1 (2003-11-21), ISBN 3-900051-00-3

Re: [R] draft of posting guide. Sorry.

Hi! Sorry. Please take my last mail to the account that it was monday and I had two hard birthday party's during the weekend. Probably all this caused the problem to express that the style of the mailing list guide shocked me. I asked this morning such a stupid(if you know the answer) question.

[R] Flury faces.

How to plot if possible flury faces in R? /Eryk __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help

[R] Plotting Andrew's curves?

Hi! Is there a function for plotting Andrew's curves in R? /Eryk __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help

[R] Whats wrong with NextMethod([[-)?

Hi! Given a list object myA with several fields i want to construct the assignment function [[-.myA which behaves differently dependent of the class of the arguments (value). If value are a myB object it should append(assign) this massvector to the data field of myA object if its any other

[R] INDEX file building packages?

Hi! Have build a package. I do not create by myself an INDEX file. If I got it right it is optional. If no INDEX are there it is created during the installation process.(So I understand the manual.) I call R CMD INSTALL mytest .. But no INDEX file are generated. Hence no function list are

[R] Font size of xlab ylab.

Hi! How thy font size of xlab ylab can be set? Eryk __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help