Re: [R] Portable R?

I use SLAX on my USB stick (1GB) and I carry R, a host of contributed R packages, all the core BioC packages, rkward as the R frontend, Octave, and many many more. SLAX is in my experience much smaller, lighter, faster, and more complete than any of the other Linux Live CDs out there (my i

Re: [R] reverse order of matrix rows

Thanks to those who provided the one-liner answers! They worked quite well. I'm quite sure that 95% of the questions posted on this mailing list could be answered with a quick..."read the manual, stupid...", but I'm very grateful to those who take the time to write one-liners. I know th

[R] heatmap -- invisible list?

Hi all, In heatmap's documentation, it mentions that the output value is actually an invisible list...how would one access this list? Thanks, Jake __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read t

[R] linux compile options (64-bit)

Sorry--sent this before I added a subject line... Begin forwarded message: > From: Jacob Michaelson <[EMAIL PROTECTED]> > Date: August 1, 2005 8:51:58 PM MDT > To: r-help@stat.math.ethz.ch > > > I've been using R for a while under Mac OS X, which thanks to the

[R] (no subject)

I've been using R for a while under Mac OS X, which thanks to the R on OS X developers, is probably the best platform for learning R. I recently built a Linux box with a Pentium D processor, and am running an AMD64 port of Ubuntu with the SMP kernel. After setting up the basics on the box,

[R] heatmap color distribution

Hi all, I've got a set of gene expression data, and I'm plotting several heatmaps for subsets of the whole set. I'd like the heatmaps to have the same color distribution, so that comparisons may be made (roughly) across heatmaps; this would require that the color distribution and distance

[R] heatmap aspect ratio

Hi all, Does anyone know of a fairly easy way to "stretch" a heatmap vertically? I've got 42 arrays and would like to be able to see as many significant genes as possible (right now I can only get 50 genes with it still being readable). In some comparisons there are several hundred signi

Re: [R] Problem: R lässt sich nicht starten

Ich habe schon lange mein Deutsch nicht geübt... also aus diesem gleichen Grund habe ich nicht "geupgradet" (das Wort fehlt mir). Ich glaube aber, dass das Problem liegt mit R.app und nicht R(framework)...ich hatte ähnliche Probleme beim Upgrade ... R im Terminal funktionierte, doch R.app start

Re: [R] random interactions in lme

18 180 4 429 21.7 18 240 4 413 24.4 18 300 4 420 26.2 Ignacio -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Douglas Bates Sent: Monday, April 25, 2005 6:40 PM To: Jacob Michaelson Cc: r-help@stat.math.et

Re: [R] residuals in lmer

On Apr 24, 2005, at 11:42 PM, Renaud Lancelot wrote: Jacob Michaelson a écrit : Does anyone know how to extract residuals in lmer? Here's the error I get: > crop.lme=lmer(response~variety*irrigation*pesticide+(1|rep)+(1|rep: pesticide)+(1|rep:pesticide:irrigation), crop.data)

[R] residuals in lmer

Does anyone know how to extract residuals in lmer? Here's the error I get: > crop.lme=lmer(response~variety*irrigation*pesticide+(1|rep)+(1|rep: pesticide)+(1|rep:pesticide:irrigation), crop.data) > qqnorm(crop.lme) Error in qqnorm.default(crop.lme) : y is empty or has only NAs > resid(crop.lme)

Re: [R] random interactions in lme

On Apr 24, 2005, at 8:52 AM, Douglas Bates wrote: Jacob Michaelson wrote: Hi All, I'm taking an Experimental Design course this semester, and have spent many long hours trying to coax the professor's SAS examples into something that will work in R (I'd prefer that the things I le

[R] random interactions in lme

Hi All, I'm taking an Experimental Design course this semester, and have spent many long hours trying to coax the professor's SAS examples into something that will work in R (I'd prefer that the things I learn not be tied to a license). It's been a long semester in that regard. One thing that