Re: [R] tcltk support....

that some packages on my system are missing. cheers Eryk On 4/26/07, Stefan Grosse <[EMAIL PROTECTED]> wrote: > > tcltk must be installed on your system, it is not a R package. Which > Linux are you using? > > W Eryk Wolski wrote: > > Rusers, > > > > libr

Re: [R] configure: WARNING: you cannot build info or HTML versions of the R manuals

> > > Texinfo. Not sure if that is also the package name on *ubuntu/debian. It's called texinfo on ubuntu/debian and it fixed the problem. Thanks a lot Peter. Eryk [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list

[R] tcltk support....

Rusers, library(Rcmdr) Loading required package: tcltk Error in firstlib(which.lib.loc, package) : Tcl/Tk support is not available on this system While installing R I run configure with configure --prefix=/bla/bla --with-tcltk make make install configure did not returned any errors. Hence,

[R] configure: WARNING: you cannot build info or HTML versions of the R manuals

Rusers, I am trying to build R2.5 on my Kubuntu machine an configure concludes with : configure: WARNING: you cannot build info or HTML versions of the R manuals What do I need to install on my machine to get rid of this warnings? Eryk [[alternative HTML version deleted]] ___

[R] Translating actxserver server commands to rcom

Dear R and R com user I have the following matlab which acesses a com server, code which I am trying to translate to R using the Rcom package: clear all; clear analysis; analysis = actxserver('EDAL.MSAnalysis'); analysis.Open('E:\work\ChromPeakFinderdata\DatafromKlaus\E112L-cad13-PI-24h_pos_

Re: [R] qqmath - Lattice error

Thanks a lot! Eryk On 5/25/06, Sundar Dorai-Raj <[EMAIL PROTECTED]> wrote: > > > > Witold Wolski wrote: > > Hi, > > > > Don't have a clue what teh following error message > > > > > > generated by this function call: > > qqmath( ~

Re: [R] qqmath - Lattice error

87 The first column are the levels. Even with this trunkated dataset the error occurs. Eryk On 5/25/06, Deepayan Sarkar <[EMAIL PROTECTED]> wrote: > > On 5/25/06, Witold Wolski <[EMAIL PROTECTED]> wrote: > > Hi, > > > > Don't have a clue what teh follow

[R] qqmath - Lattice error

Hi, Don't have a clue what teh following error message generated by this function call: qqmath( ~val|ind,data = xx ,distribution = function(p){ qt(p,df=20)} ,ylab="Sample Quatinles" ,xlab="Theoretical Quantiles" ,panel=function(x,y) { panel.qqmathline

Re: [R] Problem with memory footprint of qq plot generated with lattice

Dave, qqmath(~val|ind,data=xx ,distribution=function(p) qt(p,df=19) ,ylab="Sample Quatinles" ,xlab="Theoretical Quantiles" ,aspect=1 ,prepanel = prepanel.qqmathline ,panel=function(x,y) { panel.qqmathline(y, distribution=function(p) qt(p,d

Re: [R] regression methods for circular(?) data.

. Thanks, cheers (Ted Harding) wrote: On 26-Sep-05 Witold Eryk Wolski wrote: Hi, I do not know the intercept and slope. And you have to know them in order to do something like: ix<-(y < 0.9*(x-50)/200 I am right? cheers Although I really knew them from the way you generated the data,

Re: [R] regression methods for circular(?) data.

Hi, I do not know the intercept and slope. And you have to know them in order to do something like: ix<-(y < 0.9*(x-50)/200 I am right? cheers (Ted Harding) wrote: On 26-Sep-05 nwew wrote: Dear R-users, I have the following data x <- runif(300,min=1,max=230) y <- x*0.005 + 0.2 y <- y+rn

[R] Violin plot for discrete variables.

. Maybee I should ask it first: Does such a plot make any sense? If not are there better solutions? cheers Eryk. -- Witold Eryk Wolski __("< School of Mathematics and Statistics _ \__/ University of Newcastle 'v' ||Newcastle upon Tyne, NE1 7RU, ENGLAND

Re: [R] Interaction term in anova - how it should be written in a manuscript table?

at 15:44 -0500, Liaw, Andy wrote: I'd suggest a $\times$ b, as you'd find in most stat textbook. Andy From: Witold Eryk Wolski Dear Rgurus, Interaction terms in the linear models function lm are specified by the colon : eg: x ~ a + b + a:b a shortcut for the above is: x ~ a*b th

[R] Interaction term in anova - how it should be written in a manuscript table?

Dear Rgurus, Interaction terms in the linear models function lm are specified by the colon : eg: x ~ a + b + a:b a shortcut for the above is: x ~ a*b the output if calling anova on the lm object will be the same in both cases a b a:b ... Resdiuals ... What I am wondering is how the inte

Re: [R] Plotting several series on one set of axes

@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html ?lines ?points par(new=TRUE) cheers Eryk -- Witold Eryk Wolski __("< School of Mathematics and Statistics _ \__/ University of N

Re: [R] Concatenate vector into string

p PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html paste( c("a","b","c"),collapse="") Eryk -- Witold Eryk Wolski __("< School of Mathematics and Statistics _ \__/ University of Newcastle 'v' ||

Re: [R] Need suggestions for plotting 3D plot

___ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Witold Eryk Wolski __("< School of Mathematics and Statistics _ \__/ University of Newcastle 'v

[R] Hot to _set_ an xmlAttr XML xmlAttr set

? Eryk -- Witold Eryk Wolski __("< School of Mathematics and Statistics _ \__/ University of Newcastle 'v' ||Newcastle upon Tyne, NE1 7RU, ENGLAND / \ ^^mail: [EMAIL PROTECTED] m m Phone : 044 (0)191 222 5376 FAX : 0

[R] The system command and the LD_LIBRARY_PATH

Hi R-gurus, In my envirovment I have specified the LD_LIBRARY_PATH to /data/opt/libmy/lib After starting R the LD_LIBRARY_PATH variable is changed. > Sys.getenv("LD_LIBRARY_PATH") "/data/opt/R-devel//lib/R/lib:/usr/local/lib:/usr/X11R6/lib:/data/opt/libmy/lib" The problem is that in /usr/loc

Re: [R] Renaming columns in data.frame, inserting/removing columns from data.frame

___ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219

Re: [R] Need your help with my R plot

read the posting guide! http://www.R-project.org/posting-guide.html Hi, Take a look at the function: ixyplot in the package IDPmisc. Eryk -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __("<

Re: [R] S4 class no longer accepts matrix in array slot under 2.0.1

"array", directly, with explicit test and coerce and matrix has a subclass array. What probably is necessary to use polymorphism -> assigning a subclass to the parent class is the "explicit test and coearce". It seems that matrix is the superclass of array. /E ___

Re: [R] scatterplot of 100000 points and pdf file format

Prof Brian Ripley wrote: On Wed, 24 Nov 2004 [EMAIL PROTECTED] wrote: On 24-Nov-04 Witold Eryk Wolski wrote: Hi, I want to draw a scatter plot with 1M and more points and save it as pdf. This makes the pdf file large. So i tried to save the file first as png and than convert it to pdf. This looks

Re: [R] scatterplot of 100000 points and pdf file format

BioC was there for this purpose: avoid heavy over-plotting lots of points. You might want to look into that, if you have not done so yet. Best, Andy From: Marc Schwartz On Wed, 2004-11-24 at 16:34 +0100, Witold Eryk Wolski wrote: Hi, I want to draw a scatter plot with 1M and more points and

Re: [R] scatterplot of 100000 points and pdf file format

[DB],"=",0.000495)),col=2,lty=1,lwd=1) abline(test,col=2,lwd=2) dev.off() Marc Schwartz wrote: On Wed, 2004-11-24 at 16:34 +0100, Witold Eryk Wolski wrote: Hi, I want to draw a scatter plot with 1M and more points and save it as pdf. This makes the pdf file large. So i tried to save the

[R] scatterplot of 100000 points and pdf file format

to reduce the size but keep the quality? /E -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __("<_ http://www.molgen.mpg.de/~wolski \__/'v' http://r4proteomics.sourceforge.net||

Re: [R] R/S-related projects on Sourceforge? Trove Categorization

Hi, This are the project which I have extracted from all your mails. 1. http://sourceforge.net/projects/rpgsql/ R PostgreSQL Interface 2. http://sourceforge.net/projects/r-spatial/ R package for spatial data classes 3. http://sourceforge.net/projects/rpy/ RPy (R from Python) 4. ht

[R] R/S-related projects on Sourceforge? Trove Categorization

rge is 967697. https://sourceforge.net/tracker/?func=detail&atid=350001&aid=967697&group_id=1 -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __("<_ http://www.molgen.mpg.de/~wolski \__/

Re: [R] "<<-" assignment no long work in class methods

linux-gnu system i386, linux-gnu status major2 minor0.0 year 2004 month10 day 04 language R __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-proje

[R] gplot.hexbin - how to set figure margin.

t method for hexbin ! ## -- plot(bin) /E Dipl. bio-chem. Eryk Witold Wolski @MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin'v' tel: 0049-30-83875219/ \

[R] how lambda is computed in smoot.spline given _df_

Hi, I posted some days ago a question concerning the computation of lambda in the smooth.spline function (which I repreat at the bottom of the mail) given _df_ . Unfortunately the documentation is not clear to me. Maybee someone can help to answer in my view the basic question: If the penaliz

[R] smooth.spline _df_ parameter?

hich is used to compute: lambda = r * 256^(3*spar - 1)? How _spar_ is set if not defined? /E Dipl. bio-chem. Eryk Witold Wolski @MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin'v'

Re: [R] How to add values to an array at any position.

Hi, In the first place I was wondering if there are no function _insert.vector_ in base. Thanks Peter and Gabor even for the "bad news". E. Peter Dalgaard wrote: Witold Eryk Wolski <[EMAIL PROTECTED]> writes: Hi, How to add values to an array at any position. Asking because

[R] How to add values to an array at any position.

stored in attr(x,"na.action") of the result vector. /E -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __("<_ http://www.molgen.mpg.de/~wolski \__/'v' http://r4proteomics.sourcefor

Re: [R] Intro to R: lecture presentation

homas __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-838

Re: [R] usage and behavior of 'setIs'

quot;) as(L1, "List2") # works # both return 'list()' # why not a 'list' with entry "a"? # Is there an additional 'setAs' needed? as(L1, "list") as(L1, "vector") L2 <- as(L1, "List2") as(L2, "list") # works as(L2, "vector

[R] Re: plot.dendrogram and plot.hclust ZOOM into the height?

Hi, Just noted that dendr2 <- cut(dendr1,h=1) plot(dendr2$upper) Gives what I am looking for. Sorry, Its quite late here. /E Witold Eryk Wolski wrote: Hi, I clustered a distance matrix and would like to draw it using plot.hclust or plot.dendrogram. The dendrogram is not informative becaus

[R] plot.dendrogram and plot.hclust ZOOM into the height?

show the tree only for the height of 1e10+-5000 but unfortunately their are no parameter like xlim,ylim in the function? Are there other ways to ZOOM? Any suggestions? /E -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219

Re: [R] C/C++

hz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __("<_ http://www.molgen.mpg.de/~wolski \__

Re: [R] colClasses

I define this using colClasses? (or is there a better way to do what I want?) Thanks. Zeynep [[alternative HTML version deleted]] __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-p

Re: [R] R-(wiki)-pedia?

. Yours Thomas P. __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin _ tel

[R] setClass - equvalent declarations?

uble. in: reconcilePropertiesAndPrototype(name, slots, prototype, superClasses, /E. -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin _ tel: 0049-30-83875219 __("< '

Re: [R] Rnewsletter article example

. __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195

Re: [R] Reading multiple files into R

__ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin _ tel

Re: [R] Is there any way to release memory in running time?

Rui __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Ber

Re: [R] function by

mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin _ tel: 0049-30-83875219 'v' http://www.molgen.mpg.

Re: [R] S4 method selection based on second argument

2]) } repmat3 <- function(A, n) { repmat1(A, n, n) } Suggestions? -- SIGSIG -- signature too long (core dumped) ______ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listi

Re: [R] Bug? using { as a function in lapply

t; lapply(1:2, "{", 9) Error in lapply(1:2, "{", 9) : ... used in an incorrect context R> R.version.string [1] "R version 1.9.1, 2004-08-03" __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-he

Re: [R] slow loops in Monte Carlo Simulations

-- Nael Al-Anaswah Department of Econometrics University of Muenster Germany __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl

Re: [R] add-on packages

elp PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin _ tel: 0049-30-83875219 'v' http://www.molgen.mpg.de/~wolski

Re: [R] Best device for printing quality

rsion) >>> >>>Thanks and best regards, >>> >>>Javier Garcia >>> >>>__ >>>[EMAIL PROTECTED] mailing list >>>https://stat.ethz.ch/mailman/listinfo/r-help >>>PLEASE do read the posting guide! http://www.R-project

[R] How to plot residuals vs. fitted of "trgls" object (spatial::surf.gls)

Hi! Would like to to make a plot of residuals vs. fitted and Y vs. predicted values from an object of class "trgls" as returned by spatial::surf.gls directly. (without calling spatial::predict.trgls) Is it possible? on which list components should I look at? /E ___

Re: [R] Multiple operations on list

Hi! Not sure if I got your point. But if it is to compute apply a function to all pairs (x1,x2);(x1,x3);(x2,x3) where x1,x2,x3 are stored in a list you can take look at the sources of function listdist which computes an object of class dist from a list, in the package "pairseqsim" available f

Re: [R] persiting complex R objects

87588 | for Human Genetics >>>fax 01865 287697 | Roosevelt Drive, Oxford OX3 7BN >>> >>>______ >>>[EMAIL PROTECTED] mailing list >>>https://stat.ethz.ch/mailman/listinfo/r-help >>>PLEA

Re: [R] Multi-dimensional scaling

st >>>https://stat.ethz.ch/mailman/listinfo/r-help >>>PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Witold Eryk Wolski @ MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin'v' tel: 00

Re: [R] Conditionally swap two columns of a data.frame?

00 rows in my data.frame). >>>>> >>>>> I would just like to swap the values in the data frame (to put the >>>>bigest >>>>> first for example), then use the above plot to get what I want. >>>>> >>>>> Should I u

Re: [R] Density Estimation

Is >>>there a function to do this, or am I way off the mark using the >>>density function at all? >>> >>>Thanks in advance, >>> >>>Brian. >>> >>>__ >>>[EMAIL PROTECTED] mailing li

Re: [R] erase columns

>>>___ >>> >>>http://it.seriea.fantasysports.yahoo.com/ >>> >>>__ >>>[EMAIL PROTECTED] mailing list >>>https://stat.ethz.ch/mailman/listinfo/r-help >>>PLEASE do read

Re: [R] GEE model

;>> >>>__ >>>[EMAIL PROTECTED] mailing list >>>https://stat.ethz.ch/mailman/listinfo/r-help >>>PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Witold Eryk Wolski

Re: [R] Sweave echoing comments (again)

s P. >>> >>>__ >>>[EMAIL PROTECTED] mailing list >>>https://stat.ethz.ch/mailman/listinfo/r-help >>>PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

Re: [R] using text on the x axis ticks rather than numbers

Hi! first supress axis drawing with param axes=FALSE in your plot function. The use axis function to add your axes. ?axis /E On Tue, 7 Sep 2004, Rajarshi Guha wrote: > Hello, > is there a way in which I can use text labels rather than numbers on > the x axis ticks? I basically have a vector of

Re: [R] substitution in expression

PROTECTED] >>>Centre for Statistics in Medicine http://www.ihs.ox.ac.uk/csm/ >>>Cancer Research UK Tel : 01865 226 677 >>>Old Road Campus, Headington, Oxford Fax : 01865 226 962 >>> >>>___

Re: [R] substitution in expression

re for Statistics in Medicine http://www.ihs.ox.ac.uk/csm/ >>>Cancer Research UK Tel : 01865 226 677 >>>Old Road Campus, Headington, Oxford Fax : 01865 226 962 >>> >>>__ >>>[EMAIL

RE: [R] Standard correlation

>>>""" >>> >>>HTH, >>>Stefan. >>>-- >>>.o. e-mail: [EMAIL PROTECTED], web: www.sdrees.org, +49 700 SDREESDE ..o >>>fingerprint = 516C C4EF 712A B26F 15C9 C7B7 5651 6964 D508 1B56 ooo >>>stefan drees -

Re: [R] seq

0.2 0.1 0.0 >>> >>>which does what I want. >>> >>>//Henric >>> >>>__ >>>[EMAIL PROTECTED] mailing list >>>https://stat.ethz.ch/mailman/listinfo/r-help >>>PLEASE do read the post

Re: [R] Accesing the name of an assigned object in a function

?assign /E On Wed, 1 Sep 2004, Henrik Andersson wrote: > I want to use the name that I assign to an object in the function that > produces the output, somewhat like below: > > stupid.function <- function(input){ > [body] > cat("Summarized output is ", output$summary, "Full output is

Re: [R] Sparse Matrices in R

t;>Danny >>> >>> [[alternative HTML version deleted]] >>> >>>______ >>>[EMAIL PROTECTED] mailing list >>>https://stat.ethz.ch/mailman/listinfo/r-help >>>PLEASE do read the posting guide!

Re: [R] More efficient matrix computation

ode is appreciated. >>> >>>Jack Wang >>> >>>______ >>>[EMAIL PROTECTED] mailing list >>>https://stat.ethz.ch/mailman/listinfo/r-help >>>PLEASE do read the posting guide! http://www.R-project.org/post

Re: [R] blockwise sums

kustr. 9; 14195 Berlin; Germany >>>+49 30 838 75115; http://www.inf.fu-berlin.de/inst/ag-se/ >>> >>>______ >>>[EMAIL PROTECTED] mailing list >>>https://stat.ethz.ch/mailman/listinfo/r-help >>

Re: [R] (no subject)

ntile of 7 ? >>> >>>thanks >>> >>>Paolo >>> >>>__ >>>[EMAIL PROTECTED] mailing list >>>https://stat.ethz.ch/mailman/listinfo/r-help >>>PLEASE do read the posting guide! http:/

Re: [R] Running R from CD?

>>>[EMAIL PROTECTED] mailing list >>>https://stat.ethz.ch/mailman/listinfo/r-help >>>PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195

Re: [R] for (i in ...) { df[[i]]<- .....}

cbind.data.frame' the objects cc[[ i ]] without >>>actually writing every single element?? >>>In this case there are 8 but what if it is a large number?? >>> >>> >>>Thank you >>> >>>______

Re: [R] About passing parameter to '.R' script file

t;> >>>Expecting your suggestion on this. >>> >>>Thanks in advance. >>> >>>Regards, >>>Kishore >>> >>>__ >>>[EMAIL PROTECTED] mailing list >>>https://stat.et

Re: [R] relative frequencies for hist()

>Steffen > >__ >[EMAIL PROTECTED] mailing list >https://stat.ethz.ch/mailman/listinfo/r-help >PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Eryk Witold Wolski@

Re: [R] lapply drops colnames

gt;>> >>>$c >>>NULL >>> >>>What is lapply doing? Why does it drop the column name of every column >>>it's iterating over? How can I get the column name as a string? >>> >>>__

[R] Comparing correlated (paired) ROC curves (sensitivities).

Hi! I am looking for functions which I can use to compare correlated ROC curves, or even better correlated (paired - obtained from the same data with different measures) sensitivities given FP rates. Eryk Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63

Re: [R] as(obj,"matrix")

The definition of dd is. dd<-matrix(0,2,2) *** REPLY SEPARATOR *** On 7/28/2004 at 4:12 PM Adaikalavan Ramasamy wrote: >>>On Wed, 2004-07-28 at 15:55, Wolski wrote: >>>> Hi! >>>> >>>> Here a simple example. >>>>

[R] as(obj,"matrix")

Hi! Here a simple example. setClass("myclass" ,representation(info="character") ,contains="matrix" ) rownames(dd)<-c("a","b") tt<-new("myclass",dd) #the source of pain. as(tt,"matrix")<-matrix(1,3,3) Error: length of dimnames [1] not equal to array extent Is there a different way to do what I

Re: [R] binning a vector

Arne >>> >>>__ >>>[EMAIL PROTECTED] mailing list >>>https://www.stat.math.ethz.ch/mailman/listinfo/r-help >>>PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem.

Re: [R] ordering of levels.

Hi! Thanks a lot. Eryk *** REPLY SEPARATOR *** On 7/26/2004 at 2:07 PM Sundar Dorai-Raj wrote: >>>Wolski wrote: >>> >>>> Hi! >>>> Have the following factors with the following levels. >>>> tmp$norm >>>> [

[R] ordering of levels.

Hi! Have the following factors with the following levels. tmp$norm [1] rank rank rank rank rank log log log rank sqrt sqrt sqrt log log rank [16] rank rank sqrt sqrt sqrt sqrt log log log log sqrt none none none none [31] none none none none sqrt none Levels: log none rank sqrt I would

Re: [R] retrieve rows from frame assuming criterion

Faroe Islands >>>Phone: +298 353900 >>>Phone(direct): +298 353912 >>>Mobile: +298 580800 >>>Fax: +298 353901 >>>E-mail: [EMAIL PROTECTED] >>>Web:www.frs.fo >>> >>&

[R] biplot & identify

only some of the points. I have noticed that both biplot.prcomp and biplot.default does a lot of scaling. So has anyone a function like identify.prcomp please? Is it possible? Sincerely Eryk Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berli

[R] 2 images with 2 color scales on one graphic device. How to get it?

force levelplot to use only a half of the graphic device? Is there a function like image which provides the color scale and is working with par(mfrow, mfcol? Eryk Dipl. bio-chem. Eryk Witold Wolski@MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin 'v' tel: 0

Re: [R] vectorizing a matrix computation

t;>>how can I vectorize such a function using, one of the *apply functions? >>> >>>many thanks >>> >>>Cheers >>> >>>Christoph >>> >>>__ >>>[EMAIL PROTECTED] mailing list

Re: [R] Sort a data frame

Hi Lets assign your data frame to the variable yourdf then: yourdf[ , order( yourdf$year ) ] should sort it. For decreasing increasing sorting see ?order Sincerely Eryk. *** REPLY SEPARATOR *** On 20.07.2004 at 09:51 Luis Rideau Cruz wrote: >Hi all > >I have the next da

Re: [R] (no subject)

sn't working? All I have is a bunch of text files, >>>each with a single column of about 30,000 rows. >>> >>>thanks >>> >>> [[alternative HTML version deleted]] >>> >>>______ >>>[EMAIL PROTECTED] mailing list

Re: [R] variable definition

__ >>>[EMAIL PROTECTED] mailing list >>>https://www.stat.math.ethz.ch/mailman/listinfo/r-help >>>PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html Dipl. bio-chem. Eryk Witold Wolski

Re: [R] Problem with the grep function

tead of TRUE by default) and I >>>obtain '2 3' a second time. >>> >>>Please can you help me : How can I obtain only 2 in using the grep >>>function >>>(without using the match function). >>> >>>Thanks you >>> >>>Julie AUBERT >>> >>>

Re: [R] Problem with the grep function

>> >>>Please can you help me : How can I obtain only 2 in using the grep >>>function >>>(without using the match function). >>> >>>Thanks you >>> >>>Julie AUBERT >>> >>>___

Re: [R] Vertical text in plot

Hi Mark! Just wonderfull. Was searching in the par documention file for vertical, angle, horizontal. The word rotation was out of my mind. Thanks a lot. Eryk *** REPLY SEPARATOR *** On 7/2/2004 at 12:52 PM Marc Schwartz wrote: >>>On Fri, 2004-07-02 at 12:45, Wol

[R] Vertical text in plot

Hallo! Would like to add vertical text labels to a histogram. Was trying with las but without sucess. I am using the standard histogram. This is what I was trying. hist(resS2$sam,breaks=seq(0,1,0.01),col=3,border=0,freq=F,add=T,xlim=c(0,1)) text(quantile(resS2$dif,0.005),5, "0.5% FP rate" ,pos=2,

Re: [R] RMySQL

Hi! I was installing RMySQL quite recently on Linux and had some troubles which I was able to solve. So maybee I can help you. But first I have to know what error messages you are getting on which operating system you are installing, which version of the package. Sincerely Eryk *** RE

Re: [R] Question about mesurating time

?system.time *** REPLY SEPARATOR *** On 30.06.2004 at 10:59 zze-PELAY Nicolas FTRD/DMR/BEL wrote: >Hello , >Is there any function to mesurate the duration of a procedure (like tic >and toc in matlab) ? > >Tic >Source("procedure.R") >Toc > >(toc is the duration between the exe

Re: [R] PAM clustering: using my own dissimilarity matrix

Hi! If your x is your symmetric matrix containing the distances than cast it to an dist object using as.dist. ?as.dist. Sincerely Eryk *** REPLY SEPARATOR *** On 29.06.2004 at 18:28 Hans Körber wrote: >Hello, > >I would like to use my own dissimilarity matrix in a PAM cluster

RE: [R] camberra distance?

>Phone 61-8-9333-6293 >Mobile 0427-50-2353 >Fax: 61-8-9333-6121 >Email: [EMAIL PROTECTED] >URL: www.cmis.csiro.au/envir > > > >-Original Message- >From: [EMAIL PROTECTED] >[mailto:[EMAIL

[R] camberra distance?

Hi! Its not an R specific question but had no idea where to ask elsewhere. Does anyone know the orginal reference to the CAMBERA DISTANCE? Eryk. Ps.: I knew that its an out of topic question (sorry). Can anyone reccomend a mailing list where such questions are in topic? __

Re: [R] RMysql installation problem. / Problem solved!

It works with: R CMD INSTALL --configure-args='--with-mysql-dir="/home/arabidopsis/software/R1.9.1/linux/mysql/"' RMySQL_0.5-5.tar.gz dunno why. Sorry for the annoyance. Eryk *** REPLY SEPARATOR *** On 28.06.2004 at 19:55 Wolski wrote: >Hi! &g

[R] RMysql installation problem.

Hi! I am trying to install the RMySQL package. The installation stops with the following error message. path to mysql is set. setenv PKG_CPPFLAGS /home/arabidopsis/software/R1.9.1/linux/mysql/include setenv PKG_LIBS /home/arabidopsis/software/R1.9.1/linux/mysql/lib R CMD INSTALL RMySQL_0.5-5.t

Re: [R] How to determine the number of dominant eigenvalues in PCA

Hi! There is a chapter in the book from Härdl about the interpretation of PCs available online. http://www.quantlet.com/mdstat/scripts/mva/htmlbook/mvahtmlframe93.html About determining the number of dominant eigenvalues is a chapter in book of A. Handl (available online but in german.) http

  1   2   3   >