Re: [R] Condition indexes and variance inflation factors

2003-07-27 Thread John Fox
Dear Peter, I'm sorry that I've taken a while to get back to you -- I was away for a few days. In the example that you give from Belsley (1991), the predictors are essentially perfectly linearly related; for example > summary(lm(x2a ~ x3a + x4a)) Call: lm(formula = x2a ~ x3a + x4a

Re: [R] Condition indexes and variance inflation factors

2003-07-24 Thread Peter Flom
Dear John An interesting discussion! I would be the last to suggest ignoring such diagnostics as Cook's D; as you point out, it diagnoses a problem which condition indices do not: Whether a point is influential. OTOH, condition indices diagnose a problem which Cook's D does not: Would shifting t

Re: [R] Condition indexes and variance inflation factors

2003-07-24 Thread John Fox
Dear Peter, At 08:24 AM 7/24/2003 -0400, Peter Flom wrote: (1) I've never liked this approach for a model with a constant, where it makes more sense to me to centre the data. I realize that opinions differ here, but it seems to me that failing to centre the data conflates collinearity with numeri

Re: [R] Condition indexes and variance inflation factors

2003-07-24 Thread Peter Flom
Thanks for all the help. Juergen Gross supplied a program which does just what Belsley suggested. Chuck Cleland, John Fox and Andy Liaw all made useful programming suggestions. John Fox asked <<< (1) I've never liked this approach for a model with a constant, where it makes more sense to me to

Re: [R] Condition indexes and variance inflation factors

2003-07-23 Thread John Fox
Dear Peter and Uwe, I don't have a copy of Belsley's 1991 book here, but I do have Belsley, Kuh, and Welsch, Regression Diagnostics (Wiley, 1980). If my memory is right, the approach is the same: Belsley's collinearity diagnostics are based on a singular-value decomposition of the scaled but un

Re: [R] Condition indexes and variance inflation factors

2003-07-23 Thread Uwe Ligges
Peter Flom wrote: Has anyone programmed condition indexes in R? I know that there is a function for variance inflation factors available in the car package; however, Belsley (1991) Conditioning Diagnostics (Wiley) notes that there are several weaknesses of VIFs: e.g. 1) High VIFs are sufficient b

[R] Condition indexes and variance inflation factors

2003-07-23 Thread Peter Flom
Has anyone programmed condition indexes in R? I know that there is a function for variance inflation factors available in the car package; however, Belsley (1991) Conditioning Diagnostics (Wiley) notes that there are several weaknesses of VIFs: e.g. 1) High VIFs are sufficient but not necessary co