Hi,
one question about TukeyHSD in R:
it seems to work only for models without Error terms but not when an
Error is specified:
Examples:
aov1-aov(MMN_ind~(GenCond*Lang)+Error(VP),data=cutie_all)
TukeyHSD(aov1,Lang,ordered=TRUE,conf.level = 0.95)
-- the German error message tells me its not
TukeyHSD, and glht in the multcomp package, are designed for
aov objects. They do not have methods for aovlist objects.
The workaround is to download and install the HH package and look at the
maiz example.
library(HH)
?MMC
In that example I show how to get the same sequential sum of squares