Re: [R] Memory issues

Please do read the rw-FAQ, Q2.9 (and the posting guide). In particular, Windows never gives 4GB to a single 32-bit user process. On Sun, 3 Sep 2006, Davendra Sohal wrote: > Hi, > I'm using R on Windows and upgraded the computer memory to 4GB, as R was > telling me that it is out of memory (for

[R] Memory issues

Hi, I'm using R on Windows and upgraded the computer memory to 4GB, as R was telling me that it is out of memory (for making heatmaps). It still says that the maximum memory is 1024Mb, even if I increase it using memory.limit and memory.size. Is there a way to permanently increase R's memory quota

Re: [R] memory issues with large data set

memory.limit may not be the correct command. I use the command 'utils:: memory.size(3*1024)' to increase my memory size after using editbin to modify the header of R to make it LARGEADDRESSAWARE as described in the above FAQ. I am able to read about 2.7Gb into memory that way with 4Gb of ram. Not o

Re: [R] memory issues with large data set

Christina Yau wrote: > Hi, > > I am running R 2.0.1.1. on Windows. It is a Dell Dimension with a > 3.2 Ghz Processor and 4Gb RAM. This question concerns a BioC package, so the correct listserv is [EMAIL PROTECTED], not the R-help listserv. In the future, you should direct questions about BioC

[R] memory issues with large data set

Hi, I am running R 2.0.1.1. on Windows. It is a Dell Dimension with a 3.2 Ghz Processor and 4Gb RAM. When using the ReadAffy() function to read in 97 arrays, I get the below error messages: Error: cannot allocate vector of size 393529 Reached total allocation of 1024Mb: see help(memory.size

Re: [R] Memory issues..

JFRI (Jesper Frickmann) wrote: I just tried out the 1.8.1 beta build, and it works! It ran through all 17 assays without a any problems on Windows 2000. Thanks to the R development team, they did a great job! As I always say at the end of a busking session, "Please, please dont applaud - just th

RE: [R] Memory issues..

+1 919 494 3460 -Original Message- From: James MacDonald [mailto:[EMAIL PROTECTED] Sent: Wednesday, November 12, 2003 1:09 PM To: JFRI (Jesper Frickman); [EMAIL PROTECTED]; [EMAIL PROTECTED] Cc: [EMAIL PROTECTED] Subject: RE: [R] Memory issues.. There was a discussion about memory

RE: [R] Memory issues..

[mailto:[EMAIL PROTECTED] > Sent: Wednesday, November 12, 2003 10:55 AM > To: JFRI (Jesper Frickman) > Cc: [EMAIL PROTECTED] > Subject: RE: [R] Memory issues.. > > > On Wed, 12 Nov 2003, JFRI (Jesper Frickman) wrote: > > > How much processing takes place before you

RE: [R] Memory issues..

To: JFRI (Jesper Frickman) Cc: [EMAIL PROTECTED] Subject: RE: [R] Memory issues.. On Wed, 12 Nov 2003, JFRI (Jesper Frickman) wrote: > How much processing takes place before you get to the lme call? Maybe > R has just used up the memory on something else. I think there is a > fair

RE: [R] Memory issues..

9 494 3266 Fax +1 919 494 3460 -Original Message- From: Thomas W Blackwell [mailto:[EMAIL PROTECTED] Sent: Wednesday, November 12, 2003 10:43 AM To: JFRI (Jesper Frickman) Cc: [EMAIL PROTECTED]; [EMAIL PROTECTED]; [EMAIL PROTECTED] Subject: RE: [R] Memory issues.. Jesper - (off-list)

RE: [R] Memory issues..

On Wed, 12 Nov 2003, JFRI (Jesper Frickman) wrote: > How much processing takes place before you get to the lme call? Maybe R > has just used up the memory on something else. I think there is a fair > amount of memory leak, as I get similar problems with my program. I use Windows, right? I don't

RE: [R] Memory issues..

(Jesper Frickman) Cc: [EMAIL PROTECTED]; [EMAIL PROTECTED]; [EMAIL PROTECTED] Subject: RE: [R] Memory issues.. Jesper - (off-list) Jim MacDonald reports seeing different memory-management behavior between Windows and Linux operating systems on the same, dual boot machine. Unfortunately, this is

RE: [R] Memory issues..

rst ones, but all assays can be completed as long > as I keep restarting... > > Maybe restarting the job can help you getting it done? > > Cheers, > Jesper > > -Original Message- > From: Rodrigo Abt [mailto:[EMAIL PROTECTED] > Sent: Monday, November 10, 20

RE: [R] Memory issues..

e restarting the job can help you getting it done? Cheers, Jesper -Original Message- From: Rodrigo Abt [mailto:[EMAIL PROTECTED] Sent: Monday, November 10, 2003 11:02 AM To: [EMAIL PROTECTED] Subject: [R] Memory issues.. Hi dear R-listers, I'm trying to fit a 3-level model using lme in R.

Re: [R] Memory issues..

On 10 Nov 2003 at 13:01, Rodrigo Abt wrote: See?Memory for how you can get R to use virtual memory. Kjetil Halvorsen > Hi dear R-listers, I'm trying to fit a 3-level model using lme in R. My > sample size is about 2965 and 3 factors: > > year (5 levels), ssize (4 levels), condition (2 levels).

Re: [R] Memory issues..

Have you done what the message said? On Mon, 10 Nov 2003, Rodrigo Abt wrote: > Hi dear R-listers, I'm trying to fit a 3-level model using lme in R. My > sample size is about 2965 and 3 factors: > > year (5 levels), ssize (4 levels), condition (2 levels). > > When I issue the following command:

Re: [R] Memory issues..

The error says you don't have enough memory on your computer. Unfortunately, the only solution may be to buy more. -roger Rodrigo Abt wrote: Hi dear R-listers, I'm trying to fit a 3-level model using lme in R. My sample size is about 2965 and 3 factors: year (5 levels), ssize (4 levels), cond

[R] Memory issues..

Hi dear R-listers, I'm trying to fit a 3-level model using lme in R. My sample size is about 2965 and 3 factors: year (5 levels), ssize (4 levels), condition (2 levels). When I issue the following command: > lme(var~year*ssize*condition,random=~ssize+condition|subject,data=smp,method ="ML") I g