Possible routes:
1) Use options(warn=2) and traceback().
2) Search the *package* sources. This is from package GRASS, I believe.
(Not all messages come from packages: they can come from R itself or from
compiled code linked into a package.)
On Mon, 6 Aug 2007, javier garcia-pintado wrote:
>
Try this:
options(warn=2) # warnings are converted to errors
# rerun your software and at the warning it will stop with an error
traceback()
On 8/6/07, javier garcia-pintado <[EMAIL PROTECTED]> wrote:
> Hi,
> Is there a way to know which library is giving a warning?
> Specifically, I'm getting a
Hi,
Is there a way to know which library is giving a warning?
Specifically, I'm getting a set of warnings:
"Too many open raster files"
Thanks and best wishes,
--
Javier García-Pintado
Institute of Earth Sciences Jaume Almera (CSIC)
Lluis Sole Sabaris s/n, 08028 Barcelona
Phone: +34 934095410
F
Dear All,
I recently wrote a package in R and did a check on my package, all is
well except for two warnings:
* checking package dependencies ... WARNING
'library' or 'require' calls not declared from:
MASS
See the information on DESCRIPTION files in the chapter 'Creating R
packages'
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
No one can help you.
Ranjan
On Wed, 28 Mar 2007 11:47:03 -0600 (MDT) [EMAIL PROTECTED] wrote:
> Hi all
>
> I was wondering if someone could help me.
Hi all
I was wondering if someone could help me.
I have to estimate some parameters, so I am using the function nlm. Inside
this function I have to integrate, hence
I am using the function adapt.
I don't understand why it is giving the following warnings:
At the beginning:
Warning: a final empt
On 6/3/2006 2:44 PM, [EMAIL PROTECTED] wrote:
> Hi : I have old Splus code that I am trying to turn into R
> ( I am using windows Xp and R 2.20 ) and I am getting a warning
> from one of my statements because the behavior of R is different from Splus.
>
> below, tempdata is a matrix of numbers an
Hi : I have old Splus code that I am trying to turn into R
( I am using windows Xp and R 2.20 ) and I am getting a warning
from one of my statements because the behavior of R is different from Splus.
below, tempdata is a matrix of numbers and
I have the following command which basically runs th
Sven Schaltenbrand wrote:
> dear list,
>
> i have a problem using the adaboost function from the package boost.
> running the example of leukemia works out very well, but so it does not on
> my own data.
>
> i always get the following 22 warnings:
>
> 1: cannot compute exact p-value with tie
Try this:
options(warn = 2)
Now rerun it and it will fail with an error at the point of the warning
and you can issue a:
traceback()
to find the exact point at which it failed so you can investigate further.
On 3/29/06, Sven Schaltenbrand <[EMAIL PROTECTED]> wrote:
> dear list,
>
> i have a pr
dear list,
i have a problem using the adaboost function from the package boost.
running the example of leukemia works out very well, but so it does not on
my own data.
i always get the following 22 warnings:
1: cannot compute exact p-value with ties in: wilcox.test.default(x[which(y
== 0)], x
Hi,
very likely your data exhibit quasi-separation which cause (log)Lik to
be monotone and thus ML estimate do not exist. However you can rely on
point estimate and use LRT to test for its significance.
Or Better: have a look to brlr or logistf packages which bypass the
monotone-likelihood probl
Hello R users
I ran more than 100 logistic regression analyses. Some of the analyses gave
me this kind warning below.
###
Warning messages:
1: algorithm did not converge in: glm.fit(x = X, y = Y, weights = weights,
start = start, etastart
t; <[EMAIL PROTECTED]>
> To: "Eric C. Jennings" <[EMAIL PROTECTED]>
> Cc:
> Sent: Wednesday, December 07, 2005 11:05 PM
> Subject: Re: [R] Warnings about user error (was read.table error)
>
>
>
>>I see no error here, let alone an error in read.
t; <[EMAIL PROTECTED]>
To: "Eric C. Jennings" <[EMAIL PROTECTED]>
Cc:
Sent: Wednesday, December 07, 2005 11:05 PM
Subject: Re: [R] Warnings about user error (was read.table error)
>I see no error here, let alone an error in read.table as claimed in your
>subject line.
&
I see no error here, let alone an error in read.table as claimed in your
subject line.
The posting guide does specifically ask `Use an informative subject line'.
Please distinguish warnings about _your_ usage from errors in R.
The first warning is that R fixed up an error in your file: it is mi
[EMAIL PROTECTED] wrote:
Hello -
This is not a real problem, just an annoyance. Sometimes, but not always,
I get a set of strange warnings from hist(). Example follows.
#Produce a histogram of start dates for a set of field measurements.
# I didn't reproduce
On 5/26/05, [EMAIL PROTECTED] <[EMAIL PROTECTED]> wrote:
> > years
> [1] "1995-01-01" "1996-01-01" "1996-01-01" "1997-01-01" "1998-01-01"
> [6] "1999-01-01" "2000-01-01" "2001-01-01" "2002-01-01" "2003-01-01"
> [11] "2004-01-01" "2005-01-01"
>
>
> By the way, is there a way to use seq() to gen
Hello -
This is not a real problem, just an annoyance. Sometimes, but not always,
I get a set of strange warnings from hist(). Example follows.
#Produce a histogram of start dates for a set of field measurements.
# I didn't reproduce all the dates, because not
On Sat, 19 Feb 2005 [EMAIL PROTECTED] wrote:
following functions doesnt work correct with my data: median(), geo.mean().
My datafiles contain more than 10.000 lines and six columns from a
flow-cytometer-measurment. I need the arithmetic and geometric mean and
median. For the calculation of the ge
[EMAIL PROTECTED] wrote:
Hello,
following functions doesnt work correct with my data: median(),
geo.mean().
My datafiles contain more than 10.000 lines and six columns from a
flow-cytometer-measurment. I need the arithmetic and geometric mean
and median. For the calculation of the geometric mea
Hello,
following functions doesnt work correct with my data: median(), geo.mean().
My datafiles contain more than 10.000 lines and six columns from a
flow-cytometer-measurment. I need the arithmetic and geometric mean and
median. For the calculation of the geometric mean i wrote following
functi
On Wed, Jan 05, 2005 at 12:59:23AM +0100, thomas wrote:
> 2. install.packages("accuracy", "zoo", "abind")
Packages like zoo, abind and RODBC (from your other mail) are actually
available pre-built for Debian. If you file /etc/apt/sources.list points to
Debian and Ubuntu (and you can have Ubuntu
thomas web.de> writes:
> Hello,
>
> unfortunately I had to compile latest version of R-2.0.1 by myself. I'd
> rather would prefer vendors binaries but since the current version of
> Ubuntu defaults to 1.9.x I had to compile R on my own in order to be up
> to date!
You could have gotten R 2.0.1 f
thomas wrote:
Hello,
Am Mittwoch, den 05.01.2005, 06:47 + schrieb Prof Brian Ripley:
On Wed, 5 Jan 2005, thomas wrote:
But there is no package `pkg1' on CRAN. Try a real name like
install.packages("tree")
Well, of cause I didn't want install pkg1 or pkg2,
the precise commandline was:
1. R CMD
Hello,
Am Mittwoch, den 05.01.2005, 06:47 + schrieb Prof Brian Ripley:
> On Wed, 5 Jan 2005, thomas wrote:
> >> But there is no package `pkg1' on CRAN. Try a real name like
> >>
> >> install.packages("tree")
> >
> > Well, of cause I didn't want install pkg1 or pkg2,
> > the precise commandli
On Wed, 5 Jan 2005, thomas wrote:
Hello,
Am Dienstag, den 04.01.2005, 23:25 + schrieb Prof Brian Ripley:
On Tue, 4 Jan 2005, thomas wrote:
I followed RNews 3/3 and used:
1. R CMD INSTALL package_version.tar.gz
and
2.options(CRAN="http://umfragen.sowi.uni-mainz.de/CRAN/";)
install.packages("pkg
Hello,
Am Dienstag, den 04.01.2005, 23:25 + schrieb Prof Brian Ripley:
> On Tue, 4 Jan 2005, thomas wrote:
> >
> > I followed RNews 3/3 and used:
> >
> > 1. R CMD INSTALL package_version.tar.gz
> >
> > and
> >
> > 2.options(CRAN="http://umfragen.sowi.uni-mainz.de/CRAN/";)
> > install.packages
Hello,
unfortunately I had to compile latest version of R-2.0.1 by myself. I'd
rather would prefer vendors binaries but since the current version of
Ubuntu defaults to 1.9.x I had to compile R on my own in order to be up
to date!
So far, everything went fine and R runs smoothly. Unfortunately I am
1. Please use a descriptive subject line.
2. In "?warnings", "See also" refers to "warning". "Details" for the
latter state, " The result depends on the value of `options("warn")'.
If `warn' is negative warnings are ignored; if it is zero they are
stored and printed after the top-le
On Mon, 23 Jun 2003, Williams, Brian wrote:
> I am running R version 1.7.1. In the process of checking the results from
> some code against the results obtained from version 1.5.1, I encountered a
> set of warning messages upon exiting from the session:
>
> Save workspace image? [y/n/c]: y
> War
I am running R version 1.7.1. In the process of checking the results from
some code against the results obtained from version 1.5.1, I encountered a
set of warning messages upon exiting from the session:
Save workspace image? [y/n/c]: y
Warning messages:
1: namespaces may not be available when l
rikB" == Henrik Bengtsson <[EMAIL PROTECTED]>
> >>>>> on Fri, 10 Jan 2003 11:27:09 +1100 writes:
>
> >> -Original Message-
> >> From: [EMAIL PROTECTED]
> >> [mailto:[EMAIL PROTECTED]] On Behalf Of David
> >
>> Kane > Sent: den 10 januari 2003 08:01
>> To: [EMAIL PROTECTED]
>> Subject: [R] Warnings with no INDEX file in a package.
>>
>>
>> In previous versions of R (at least in 1.5.1, I think), my
>> practice was not to include an I
> -Original Message-
> From: [EMAIL PROTECTED]
> [mailto:[EMAIL PROTECTED]] On Behalf Of David
> Kane Sent: den 10 januari 2003 08:01
> To: [EMAIL PROTECTED]
> Subject: [R] Warnings with no INDEX file in a package.
>
>
> In previous versions of R (at l
On Thu, 9 Jan 2003, David Kane I have read the suggested sections of the manual. It would seem to me that I
> should be able to continue to follow my prior practice by turning off the
> warning for missing INDEX. Certainly, the fact that R CMD build creates an
> INDEX for you if one is not presen
In previous versions of R (at least in 1.5.1, I think), my practice was not to
include an INDEX file in the package. R CMD check did not complain and an INDEX
was created for me when I use R CMD build.
At least, this is how I remember it. I thought that this was a good way to
behave since it ensur
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