Re: [R] Memory issues

2006-09-03 Thread Prof Brian Ripley
Please do read the rw-FAQ, Q2.9 (and the posting guide). In particular, Windows never gives 4GB to a single 32-bit user process. On Sun, 3 Sep 2006, Davendra Sohal wrote: Hi, I'm using R on Windows and upgraded the computer memory to 4GB, as R was telling me that it is out of memory (for

Re: [R] memory issues with large data set

2005-09-29 Thread roger bos
memory.limit may not be the correct command. I use the command 'utils:: memory.size(3*1024)' to increase my memory size after using editbin to modify the header of R to make it LARGEADDRESSAWARE as described in the above FAQ. I am able to read about 2.7Gb into memory that way with 4Gb of ram. Not

Re: [R] memory issues with large data set

2005-09-28 Thread James W. MacDonald
Christina Yau wrote: Hi, I am running R 2.0.1.1. on Windows. It is a Dell Dimension with a 3.2 Ghz Processor and 4Gb RAM. This question concerns a BioC package, so the correct listserv is [EMAIL PROTECTED], not the R-help listserv. In the future, you should direct questions about BioC

RE: [R] Memory issues..

2003-11-21 Thread JFRI (Jesper Frickmann)
+1 919 494 3460 -Original Message- From: James MacDonald [mailto:[EMAIL PROTECTED] Sent: Wednesday, November 12, 2003 1:09 PM To: JFRI (Jesper Frickman); [EMAIL PROTECTED]; [EMAIL PROTECTED] Cc: [EMAIL PROTECTED] Subject: RE: [R] Memory issues.. There was a discussion about memory

Re: [R] Memory issues..

2003-11-21 Thread Barry Rowlingson
JFRI (Jesper Frickmann) wrote: I just tried out the 1.8.1 beta build, and it works! It ran through all 17 assays without a any problems on Windows 2000. Thanks to the R development team, they did a great job! As I always say at the end of a busking session, Please, please dont applaud - just

RE: [R] Memory issues..

2003-11-12 Thread JFRI (Jesper Frickman)
How much processing takes place before you get to the lme call? Maybe R has just used up the memory on something else. I think there is a fair amount of memory leak, as I get similar problems with my program. I use R 1.8.0. My program goes as follows. 1. Use RODBC to get a data.frame containing

RE: [R] Memory issues..

2003-11-12 Thread Thomas W Blackwell
Jesper - (off-list) Jim MacDonald reports seeing different memory-management behavior between Windows and Linux operating systems on the same, dual boot machine. Unfortunately, this is happening at the operating system level, so the R code cannot do anything about it. I have cc'ed Jim on this

RE: [R] Memory issues..

2003-11-12 Thread JFRI (Jesper Frickman)
(Jesper Frickman) Cc: [EMAIL PROTECTED]; [EMAIL PROTECTED]; [EMAIL PROTECTED] Subject: RE: [R] Memory issues.. Jesper - (off-list) Jim MacDonald reports seeing different memory-management behavior between Windows and Linux operating systems on the same, dual boot machine. Unfortunately

RE: [R] Memory issues..

2003-11-12 Thread Prof Brian Ripley
On Wed, 12 Nov 2003, JFRI (Jesper Frickman) wrote: How much processing takes place before you get to the lme call? Maybe R has just used up the memory on something else. I think there is a fair amount of memory leak, as I get similar problems with my program. I use Windows, right? I don't

RE: [R] Memory issues..

2003-11-12 Thread JFRI (Jesper Frickman)
3266 Fax +1 919 494 3460 -Original Message- From: Thomas W Blackwell [mailto:[EMAIL PROTECTED] Sent: Wednesday, November 12, 2003 10:43 AM To: JFRI (Jesper Frickman) Cc: [EMAIL PROTECTED]; [EMAIL PROTECTED]; [EMAIL PROTECTED] Subject: RE: [R] Memory issues.. Jesper - (off-list) Jim

Re: [R] Memory issues..

2003-11-10 Thread Roger D. Peng
The error says you don't have enough memory on your computer. Unfortunately, the only solution may be to buy more. -roger Rodrigo Abt wrote: Hi dear R-listers, I'm trying to fit a 3-level model using lme in R. My sample size is about 2965 and 3 factors: year (5 levels), ssize (4 levels),

Re: [R] Memory issues..

2003-11-10 Thread Prof Brian Ripley
Have you done what the message said? On Mon, 10 Nov 2003, Rodrigo Abt wrote: Hi dear R-listers, I'm trying to fit a 3-level model using lme in R. My sample size is about 2965 and 3 factors: year (5 levels), ssize (4 levels), condition (2 levels). When I issue the following command:

Re: [R] Memory issues..

2003-11-10 Thread kjetil
On 10 Nov 2003 at 13:01, Rodrigo Abt wrote: See?Memory for how you can get R to use virtual memory. Kjetil Halvorsen Hi dear R-listers, I'm trying to fit a 3-level model using lme in R. My sample size is about 2965 and 3 factors: year (5 levels), ssize (4 levels), condition (2 levels).