Re: [R-pkg-devel] Vignette does not show up after loading package

2015-06-03 Thread Duncan Murdoch
On 03/06/2015 12:16 PM, Rik Verdonck wrote: > Hi all, > > > > > I am developing a package for the interpretation of mass spectrometry data, > which can be found here: https://github.com/goat-anti-rabbit/labelpepmatch.R If your vignette is not written in Sweave, you need to tell R what package

[R-pkg-devel] Vignette does not show up after loading package

2015-06-03 Thread Rik Verdonck
Hi all, I am developing a package for the interpretation of mass spectrometry data, which can be found here: https://github.com/goat-anti-rabbit/labelpepmatch.R I wrote a vignette that compiles fine into a .html using knitr in Rstudio. The output line in the vignette.rmd file looks like : ??

Re: [R-pkg-devel] Running a script after a package has been installed.

2015-06-03 Thread Dirk Eddelbuettel
On 3 June 2015 at 07:13, Dirk Eddelbuettel wrote: | | On 3 June 2015 at 12:51, Luca Cerone wrote: | | Dear all, | | I am writing a package that contains some binaries that should be | | linked in /usr/bin after the package | | [ Don't do that, /usr is for your system. Use /usr/local/bin. ] | |

Re: [R-pkg-devel] Running a script after a package has been installed.

2015-06-03 Thread Dirk Eddelbuettel
On 3 June 2015 at 12:51, Luca Cerone wrote: | Dear all, | I am writing a package that contains some binaries that should be | linked in /usr/bin after the package [ Don't do that, /usr is for your system. Use /usr/local/bin. ] | has been installed (I placed them in Rpackage/inst/bin) | | I know

[R-pkg-devel] Running a script after a package has been installed.

2015-06-03 Thread Luca Cerone
Dear all, I am writing a package that contains some binaries that should be linked in /usr/bin after the package has been installed (I placed them in Rpackage/inst/bin) I know I can use a script "configure" or "configure.win" to be run before the package has been installed, is there a way I can wr

Re: [R-pkg-devel] FW: CRAN submission berryFunctions 1.8.0

2015-06-03 Thread Martyn Plummer
On Wed, 2015-06-03 at 09:51 +0200, Uwe Ligges wrote: > > On 03.06.2015 09:48, Berry Boessenkool wrote: > > > > Hi, > > > > after submitting my package update, CRAN (Brian Ripley) found a couple of > > warnings / messages. > > URLs that are not longer existent, a non-ASCII character from copypasti

Re: [R-pkg-devel] FW: CRAN submission berryFunctions 1.8.0

2015-06-03 Thread Kirill Müller
Note that current devtools 1.8.0 attempts to use the spell checker when you say devtools::check(check_version = TRUE), and warns if no spell checker could be found. Perhaps a simpler option is to build on win-builder before submission (e.g., by running devtools::build_win() ), which is a good i

Re: [R-pkg-devel] FW: CRAN submission berryFunctions 1.8.0

2015-06-03 Thread Berry Boessenkool
I found the actual reason: I was really stupid. At the time of testing, I had killed the internet acces. Sorry for bothering you all ... Berry PS: If you want to know why on earth I did that: Yesterday, I got the error: unable to connect to CRAN.R-project.org on port 80. I couldn't find an effe

Re: [R-pkg-devel] FW: CRAN submission berryFunctions 1.8.0

2015-06-03 Thread Uwe Ligges
On 03.06.2015 09:48, Berry Boessenkool wrote: Hi, after submitting my package update, CRAN (Brian Ripley) found a couple of warnings / messages. URLs that are not longer existent, a non-ASCII character from copypasting, incorrect title case. Stuff that I should and could definitely solve be

[R-pkg-devel] FW: CRAN submission berryFunctions 1.8.0

2015-06-03 Thread Berry Boessenkool
Hi, after submitting my package update, CRAN (Brian Ripley) found a couple of warnings / messages. URLs that are not longer existent, a non-ASCII character from copypasting, incorrect title case. Stuff that I should and could definitely solve before submitting. Why did the latest Rdevel (2015-